Homepage for my research group as an example of LYX Jekyll Theme.

pyMBE provides tools to facilitate building up molecules with complex architectures in the Molecular Dynamics software ESPResSo. For an up-to-date API documention please check our website:

Computational statistical mechanics of field-responsive polymer chains

Single polymer chain simulation; linear or circular configuration, optional and adjustable excluded volume force.

Python code to model spinodal decomposition using the Cahn-Hilliard equation.

Use PyConforMap to generate a simple scatter plot to map conformational landscapes of intrinsically disordered proteins, and quantify conformational diversity.

Fit sticky-reptation model to experimental linear viscoelasticity data

Simulation scripts used in the study "Separation of sticker-spacer energetics governs the coalescence of metastable biomolecular condensates"

Code to model active loop extrusion on chromatin using hybrid MD-MC.

a tool for the analysis of multiplexed FISH (Fluorescence In Situ Hybridization) data

Code used for publication in Physical Review E: "Polymer dynamics under tension: mean first passage time for looping", by Wout Laeremans, Anne Floor den Ouden, Jef Hooyberghs and Wouter G. Ellenbroek.