A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data
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Jul 22, 2026 - Nextflow
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germline-variant-calling
Here are 6 public repositories matching this topic...
Germline structural variant calling pipeline for short read WGS datasets
workflow bioinformatics pipeline genomics nextflow ngs manta bam survivor structural-variants smoove tiddit germline-variant-calling annotsv dsl2 australian-biocommons
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Jul 24, 2026 - Nextflow
Framework to benchmark germline copy-number variant detection tools from NGS data
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Dec 24, 2024 - R
Germline Variant Calling Pipeline built in Snakemake
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Feb 18, 2020 - Shell
CBIcall is a configuration-driven framework for reproducible variant calling in large sequencing cohorts, enabling standardized pipelines from FASTQ to analysis-ready VCFs across heterogeneous computing environments.
python bash bioinformatics snakemake genomics nextflow json-schema ngs variant-calling ngs-analysis ngs-pipeline bioinformatics-tool germline-variant-calling nextflow-pipeline snakemake-pipeline
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Jul 20, 2026 - Python
Germline Variants Pipeline
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Feb 19, 2025
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