GitHub - thielema/hmm: hidden markov models in haskell

This branch is 19 commits behind mikeizbicki/hmm:master.

Name	Name	Last commit message	Last commit date
Latest commit mikeizbicki Merge pull request mikeizbicki#2 from JPMoresmau/master Feb 14, 2014 ad6785b · Feb 14, 2014 History 25 Commits
Data	Data	performance of viterbi	Feb 14, 2014
dist	dist	removed base version numbers due to bug report	Aug 6, 2013
.hmm.cabal.2.swp	.hmm.cabal.2.swp	removed base version numbers due to bug report	Aug 6, 2013
.hmm.cabal.swp	.hmm.cabal.swp	removed base version numbers due to bug report	Aug 6, 2013
BioHMM.hs	BioHMM.hs	Added viterbi algorithm, more performance tests, more ways to create …	Mar 17, 2012
HMMPerf.hs	HMMPerf.hs	Added viterbi algorithm, more performance tests, more ways to create …	Mar 17, 2012
HMMTest.hs	HMMTest.hs	BW now does ~30000bp/min. Began test suite.	Mar 12, 2012
LICENSE	LICENSE	Updated config so hackage would compile	Mar 27, 2012
OldHMM.hs	OldHMM.hs	Added performance testing and reorganized	Mar 1, 2012
README	README	Ready for first release	Mar 25, 2012
Setup.hs	Setup.hs	Ready for first release	Mar 25, 2012
hmm.cabal	hmm.cabal	binary serialization	Feb 14, 2014
test.hs	test.hs	Added initial HMM stuff	Feb 26, 2012

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This is a Hidden Markov Model (HMM) library for Haskell.  It is in the hackage repository already, and that's probably the version that you want to use.  Try installing it with the command:

> cabal install hmm

The easiest way to learn to use the library is by following the tutorial at: http://izbicki.me/blog/using-hmms-in-haskell-for-bioinformatics