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Extend cell cycle gene scoring#421

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mumichae merged 12 commits intomaintheislab/scib:mainfrom extend_cell_cycle_genestheislab/scib:extend_cell_cycle_genesCopy head branch name to clipboardJan 13, 2025

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Commits on Jan 10, 2025

• refactor cell cycle gene handling

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  a1fe928

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• add new gene sets for C. elegans and zebrafish and re-parse Tirosh genes from beginning

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• add test datasets for C. elegans and zebrafish

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• separate function for cell cycle gene set retrieval

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• smart use of gene ID or gene name depending on data

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• add gene scoring test for zebrafish and c_elegans

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• Merge branch 'main' into extend_cell_cycle_genes

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Commits on Jan 13, 2025

• simplify random gene selection for error reporting

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• use Literal for organism

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• add list of possible organism names to error message

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• use scanpy backup_url functionality

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• add assertions for gene score columns

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