add assertions for gene score columns

theislab · Jan 13, 2025 · 92b9ebf · 92b9ebf
1 parent 3a64fbb
commit 92b9ebf
Showing 1 changed file with 9 additions and 0 deletions.
diff --git a/tests/preprocessing/test_gene_scoring.py b/tests/preprocessing/test_gene_scoring.py
@@ -5,10 +5,19 @@
 
 
 def test_mouse(adata_paul15):
+
+    assert "S_score" not in adata_paul15.obs.columns
+    assert "G2M_score" not in adata_paul15.obs.columns
+    assert "phase" not in adata_paul15.obs.columns
+
     scib.pp.score_cell_cycle(
         adata_paul15,
         organism="mouse",
     )
+    assert "S_score" in adata_paul15.obs.columns
+    assert "G2M_score" in adata_paul15.obs.columns
+    assert "phase" in adata_paul15.obs.columns
+
     scib.pp.score_cell_cycle(
         adata_paul15,
         organism="mus musculus",