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[status] 2025-01-13 12:13:02 UTC
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actions-user committed Jan 13, 2025
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@@ -136,7 +136,7 @@ theislab,cellrank,theislab/cellrank,356,8,18,47,FALSE,https://github.com/theisla

* Don't run on 3.13 (numba)

* Test on `macos-15`",[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/12624236213) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/12624325510)
* Test on `macos-15`",[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/12738414455) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/12738505984)
theislab,cellrank2_reproducibility,theislab/cellrank2_reproducibility,9,1,2,2,FALSE,https://github.com/theislab/cellrank2_reproducibility,9,8020e797c0afcde5ba9b8c2f0182b1c25d56f11f,"Update paper references (#64)

Update references to published paper.",[![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/10706963288) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/10706963242)
@@ -255,7 +255,7 @@ theislab,gastrulation_analysis,theislab/gastrulation_analysis,10,4,0,1,FALSE,htt
theislab,geome,theislab/geome,16,3,3,4,FALSE,https://github.com/theislab/geome,16,402a0a8cdb442fee8666416e5f163c4098fa0c07,"Merge pull request #55 from theislab/fix/toarray

Fix Sparse "".A"" Not Found",[![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/10868284169)
theislab,gh-dashboard,theislab/gh-dashboard,3,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,3,4361cdef511bbbf294627fb6399d3516a1aa1147,[status] 2025-01-11 12:13:28 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/12733284601)
theislab,gh-dashboard,theislab/gh-dashboard,3,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,3,81a9b6225cbce09ca65906f79d3dc5676f9f5c42,[status] 2025-01-12 12:12:24 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/12746772963)
theislab,graph_abstraction,theislab/graph_abstraction,26,8,0,10,FALSE,https://github.com/theislab/graph_abstraction,26,NA,NA,NA
theislab,graphcompass,theislab/graphcompass,34,2,1,0,FALSE,https://github.com/theislab/graphcompass,34,7c455146402592d7ba73173a72d2abc4d5f7737b,initial commit,[![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237)
theislab,greatpy,theislab/greatpy,10,3,4,0,FALSE,https://github.com/theislab/greatpy,10,NA,NA,NA
@@ -278,12 +278,15 @@ theislab,masterpraktikum_ssl_segmentation,theislab/masterpraktikum_ssl_segmentat
theislab,moscot,theislab/moscot,119,3,40,9,FALSE,https://github.com/theislab/moscot,119,29764d40f7f0ce3d160ae901caf6bbaeada89043,"Merge pull request #748 from theislab/refactor/handle-solve-args

Refactor/handle solve args",[![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/12301003048)
theislab,moscot,theislab/moscot,119,3,40,9,FALSE,https://github.com/theislab/moscot,119,41c57a15460198965dc3f00d708232bfc568b36c,"Merge pull request #778 from theislab/feature/move-to-neural

Neural Updates: Move GENOTLinProblem, Update SolverOutput Class Hierarchy",[![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/12738428751) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/12738358641)
theislab,moscot-framework_reproducibility,theislab/moscot-framework_reproducibility,3,2,2,0,FALSE,https://github.com/theislab/moscot-framework_reproducibility,3,NA,NA,NA
theislab,moscot_benchmarks,theislab/moscot_benchmarks,2,2,1,0,FALSE,https://github.com/theislab/moscot_benchmarks,2,NA,NA,NA
theislab,moscot_not,theislab/moscot_not,3,2,8,1,FALSE,https://github.com/theislab/moscot_not,3,NA,NA,NA
theislab,moscot_notebooks,theislab/moscot_notebooks,8,1,7,4,FALSE,https://github.com/theislab/moscot_notebooks,8,320930274245a1b556e34778d0054ca6e2432b1e,"Merge pull request #84 from theislab/add/birth_death_desc

describe birth death parameters",[![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/12624283480)
describe birth death parameters",[![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/12738465210)
theislab,moslin,theislab/moslin,12,1,0,1,FALSE,https://github.com/theislab/moslin,12,NA,NA,NA
theislab,mouse_cross-condition_pancreatic_islet_atlas,theislab/mouse_cross-condition_pancreatic_islet_atlas,7,2,0,4,FALSE,https://github.com/theislab/mouse_cross-condition_pancreatic_islet_atlas,7,NA,NA,NA
theislab,mubind,theislab/mubind,28,3,29,0,FALSE,https://github.com/theislab/mubind,28,3f62f838470ebc499540ff54fb8d074363abd7b6,Dropbox URL (typo),[![](https://github.com/theislab/mubind/workflows/Python%20package/badge.svg)](https://github.com/theislab/mubind/actions/runs/10632591185)
@@ -313,10 +316,10 @@ theislab,perturbation-metrics,theislab/perturbation-metrics,4,2,1,0,FALSE,https:
theislab,prophet,theislab/prophet,27,5,3,2,FALSE,https://github.com/theislab/prophet,27,NA,NA,NA
theislab,prophet-reproducibility,theislab/prophet-reproducibility,0,3,0,0,FALSE,https://github.com/theislab/prophet-reproducibility,0,NA,NA,NA
theislab,pseudodynamics,theislab/pseudodynamics,39,7,0,6,FALSE,https://github.com/theislab/pseudodynamics,39,NA,NA,NA
theislab,regvelo,theislab/regvelo,20,2,0,1,FALSE,https://github.com/theislab/regvelo,20,619e025f7b811d77157dda144013ab1b86f8cb54,"Merge pull request #14 from theislab/WWXkenmo-patch-1
theislab,regvelo,theislab/regvelo,21,2,0,1,FALSE,https://github.com/theislab/regvelo,21,619e025f7b811d77157dda144013ab1b86f8cb54,"Merge pull request #14 from theislab/WWXkenmo-patch-1

Update pyproject.toml",[![](https://github.com/theislab/regvelo/workflows/regvelo/badge.svg)](https://github.com/theislab/regvelo/actions/runs/11323656087)
theislab,regvelo,theislab/regvelo,20,2,0,1,FALSE,https://github.com/theislab/regvelo,20,a9851861451a9af67ef40ded8f56f62957cf334e,"Merge pull request #7 from theislab/feat/update_package
theislab,regvelo,theislab/regvelo,21,2,0,1,FALSE,https://github.com/theislab/regvelo,21,a9851861451a9af67ef40ded8f56f62957cf334e,"Merge pull request #7 from theislab/feat/update_package

update dependences",[![](https://github.com/theislab/regvelo/workflows/Release/badge.svg)](https://github.com/theislab/regvelo/actions/runs/11307228307)
theislab,regvelo_reproducibility,theislab/regvelo_reproducibility,2,0,0,0,FALSE,https://github.com/theislab/regvelo_reproducibility,2,56512e9001e4df89e16713aed0fa8ccd0cf4c017,fix wrong file name,[![](https://github.com/theislab/regvelo_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/regvelo_reproducibility/actions/runs/12651733568) [![](https://github.com/theislab/regvelo_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/regvelo_reproducibility/actions/runs/12651733570)
@@ -404,7 +407,7 @@ theislab,scib,theislab/scib,323,14,41,64,FALSE,https://github.com/theislab/scib,
* change default to numpy",[![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/12436783802)
theislab,scib-pipeline,theislab/scib-pipeline,67,7,16,27,FALSE,https://github.com/theislab/scib-pipeline,67,NA,NA,NA
theislab,scib-reproducibility,theislab/scib-reproducibility,56,6,4,14,FALSE,https://github.com/theislab/scib-reproducibility,56,NA,NA,NA
theislab,scvelo,theislab/scvelo,421,13,60,104,FALSE,https://github.com/theislab/scvelo,421,22b6e7e6cdb3c321c5a1be4ab2f29486ba01ab4f,"Update logging (#1281)
theislab,scvelo,theislab/scvelo,422,13,60,104,FALSE,https://github.com/theislab/scvelo,422,22b6e7e6cdb3c321c5a1be4ab2f29486ba01ab4f,"Update logging (#1281)

* Move logging to dedicated module

@@ -437,13 +440,13 @@ theislab,sfaira-site,theislab/sfaira-site,0,4,0,0,FALSE,https://github.com/theis
theislab,sfaira_benchmarks,theislab/sfaira_benchmarks,0,3,0,0,FALSE,https://github.com/theislab/sfaira_benchmarks,0,NA,NA,NA
theislab,sfaira_extension,theislab/sfaira_extension,0,3,1,0,FALSE,https://github.com/theislab/sfaira_extension,0,NA,NA,NA
theislab,sfaira_tutorials,theislab/sfaira_tutorials,6,4,4,2,FALSE,https://github.com/theislab/sfaira_tutorials,6,NA,NA,NA
theislab,single-cell-best-practices,theislab/single-cell-best-practices,814,19,71,196,FALSE,https://github.com/theislab/single-cell-best-practices,814,2580faa81d01d4e9b37b36c9de88cdce1d68f0e6,Added comma to improve readability (#312),[![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/12713532569) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/12713532575) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/12713532573) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/12713532531)
theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,288,15,41,36,FALSE,https://github.com/theislab/single-cell-transformer-papers,288,75797db884ef3cf60e82ed4454168a26e7284637,add manuscript information to index,[![](https://github.com/theislab/single-cell-transformer-papers/workflows/Document%20Generation/badge.svg)](https://github.com/theislab/single-cell-transformer-papers/actions/runs/12447562233)
theislab,single-cell-best-practices,theislab/single-cell-best-practices,816,19,71,197,FALSE,https://github.com/theislab/single-cell-best-practices,816,2580faa81d01d4e9b37b36c9de88cdce1d68f0e6,Added comma to improve readability (#312),[![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/12713532569) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/12713532575) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/12713532573) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/12713532531)
theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,289,15,41,36,FALSE,https://github.com/theislab/single-cell-transformer-papers,289,75797db884ef3cf60e82ed4454168a26e7284637,add manuscript information to index,[![](https://github.com/theislab/single-cell-transformer-papers/workflows/Document%20Generation/badge.svg)](https://github.com/theislab/single-cell-transformer-papers/actions/runs/12447562233)
theislab,single-cell-tutorial,theislab/single-cell-tutorial,1433,30,21,468,FALSE,https://github.com/theislab/single-cell-tutorial,1433,NA,NA,NA
theislab,singlecell_proteomics,theislab/singlecell_proteomics,5,5,6,3,FALSE,https://github.com/theislab/singlecell_proteomics,5,NA,NA,NA
theislab,spapros,theislab/spapros,33,3,12,7,FALSE,https://github.com/theislab/spapros,33,1ec08e6809978021e7ad0d7b7ce4f5412f391f79,"Merge pull request #357 from theislab/scrinshot_probe_designer

adapter tutorials to new framework",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703697) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/12729302543)
adapter tutorials to new framework",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703697) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/12739048157)
theislab,spapros,theislab/spapros,33,3,12,7,FALSE,https://github.com/theislab/spapros,33,2f6c1ad9fdab44d29017e268ef215d18278f56b9,prints for identifying mem issues,[![](https://github.com/theislab/spapros/workflows/Build%20spapros%20Package/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589767) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589776) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589778) [![](https://github.com/theislab/spapros/workflows/Run%20spapros%20Tests/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589764)
theislab,spapros-pipeline,theislab/spapros-pipeline,7,2,0,0,FALSE,https://github.com/theislab/spapros-pipeline,7,fe84cf66cf6cf9b8fb441c74d4c004c20d1003cf,Update readme to refer to spapros smk repo,[![](https://github.com/theislab/spapros-pipeline/workflows/Run%20Example/badge.svg)](https://github.com/theislab/spapros-pipeline/actions/runs/11988359512)
theislab,spapros-smk,theislab/spapros-smk,0,2,0,1,FALSE,https://github.com/theislab/spapros-smk,0,NA,NA,NA
@@ -455,7 +458,7 @@ theislab,spatialdata-db,theislab/spatialdata-db,1,1,25,0,FALSE,https://github.co
Add SpatialDataValidator",[![](https://github.com/theislab/spatialdata-db/workflows/Check%20Build/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/11362121634) [![](https://github.com/theislab/spatialdata-db/workflows/Test/badge.svg)](https://github.com/theislab/spatialdata-db/actions/runs/12567397061)
theislab,spatialdata-db-submission,theislab/spatialdata-db-submission,0,2,0,0,FALSE,https://github.com/theislab/spatialdata-db-submission,0,NA,NA,NA
theislab,squidpy_reproducibility,theislab/squidpy_reproducibility,8,2,0,7,FALSE,https://github.com/theislab/squidpy_reproducibility,8,NA,NA,NA
theislab,ssl_in_scg,theislab/ssl_in_scg,8,1,0,2,FALSE,https://github.com/theislab/ssl_in_scg,8,NA,NA,NA
theislab,ssl_in_scg,theislab/ssl_in_scg,9,1,0,2,FALSE,https://github.com/theislab/ssl_in_scg,9,NA,NA,NA
theislab,superexacttestpy,theislab/superexacttestpy,10,2,3,0,FALSE,https://github.com/theislab/superexacttestpy,10,NA,NA,NA
theislab,svaeligr,theislab/svaeligr,3,3,0,0,FALSE,https://github.com/theislab/svaeligr,3,NA,NA,NA
theislab,tardis,theislab/tardis,1,1,1,2,FALSE,https://github.com/theislab/tardis,1,NA,NA,NA
@@ -473,6 +476,6 @@ theislab,trvaep,theislab/trvaep,9,3,0,6,FALSE,https://github.com/theislab/trvaep
theislab,txsim,theislab/txsim,3,2,40,0,FALSE,https://github.com/theislab/txsim,3,NA,NA,NA
theislab,unbalanced_monge_maps_single_cell,theislab/unbalanced_monge_maps_single_cell,1,1,0,0,FALSE,https://github.com/theislab/unbalanced_monge_maps_single_cell,1,NA,NA,NA
theislab,zebrafish_bipolarity,theislab/zebrafish_bipolarity,1,4,0,1,FALSE,https://github.com/theislab/zebrafish_bipolarity,1,NA,NA,NA
theislab,zellkonverter,theislab/zellkonverter,156,5,13,28,FALSE,https://github.com/theislab/zellkonverter,156,8358a40469a84aad720c0014cf5774827186ee74,"Merge pull request #133 from theislab/dependabot/github_actions/JamesIves/github-pages-deploy-action-4.7.2
theislab,zellkonverter,theislab/zellkonverter,157,5,13,28,FALSE,https://github.com/theislab/zellkonverter,157,8358a40469a84aad720c0014cf5774827186ee74,"Merge pull request #133 from theislab/dependabot/github_actions/JamesIves/github-pages-deploy-action-4.7.2

Bump JamesIves/github-pages-deploy-action from 4.7.1 to 4.7.2",[![](https://github.com/theislab/zellkonverter/workflows/.github/workflows/check-bioc.yml/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/12250677013)

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