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[status] 2023-11-20 12:09:04 UTC
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@@ -64,7 +64,7 @@ theislab,cellrank,theislab/cellrank,270,7,7,35,FALSE,https://github.com/theislab

* Use new PyPI trusted publisher management

* Add forgotten on",[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/6844018247) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/6844068241)
* Add forgotten on",[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/6923841301) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/6923892678)
theislab,cellrank,theislab/cellrank,270,7,7,35,FALSE,https://github.com/theislab/cellrank,270,c4983d31c0243b7ee2893b4d02a13c104e1a6be2,Use new PyPI trusted publisher management,[![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/6804858246)
theislab,cellrank2_reproducibility,theislab/cellrank2_reproducibility,2,0,0,0,FALSE,https://github.com/theislab/cellrank2_reproducibility,2,96c815f78ecbb75d9dc12f0ee995851acf314add,"Add `lint.yml` (#40)

@@ -90,10 +90,10 @@ theislab,diffxpy,theislab/diffxpy,169,7,106,22,FALSE,https://github.com/theislab
theislab,diffxpy_tutorials,theislab/diffxpy_tutorials,10,8,4,2,FALSE,https://github.com/theislab/diffxpy_tutorials,10,NA,NA,NA
theislab,disent,theislab/disent,5,3,0,0,FALSE,https://github.com/theislab/disent,5,NA,NA,NA
theislab,edgepy,theislab/edgepy,0,3,0,0,FALSE,https://github.com/theislab/edgepy,0,NA,NA,NA
theislab,ehrapy,theislab/ehrapy,59,5,41,7,FALSE,https://github.com/theislab/ehrapy,59,84d33c8988ea560aa557fbe6a99b926befa84457,"Add test windows
theislab,ehrapy,theislab/ehrapy,59,5,41,8,FALSE,https://github.com/theislab/ehrapy,59,84d33c8988ea560aa557fbe6a99b926befa84457,"Add test windows

Signed-off-by: zethson <lukas.heumos@posteo.net>",[![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787)
theislab,ehrapy,theislab/ehrapy,59,5,41,7,FALSE,https://github.com/theislab/ehrapy,59,b981e1e5d2d80a84de8dccb990881c53f7594cc4,"Many test warnings
theislab,ehrapy,theislab/ehrapy,59,5,41,8,FALSE,https://github.com/theislab/ehrapy,59,b981e1e5d2d80a84de8dccb990881c53f7594cc4,"Many test warnings

Signed-off-by: zethson <lukas.heumos@posteo.net>",[![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6877834290) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6877834287) [![](https://github.com/theislab/ehrapy/workflows/Test/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6877834278) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6877834283) [![](https://github.com/theislab/ehrapy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/6877834282)
theislab,ehrapy-cli,theislab/ehrapy-cli,1,3,0,0,FALSE,https://github.com/theislab/ehrapy-cli,1,NA,NA,NA
@@ -112,7 +112,7 @@ theislab,gastrulation_analysis,theislab/gastrulation_analysis,7,4,0,1,FALSE,http
theislab,geome,theislab/geome,13,3,5,4,FALSE,https://github.com/theislab/geome,13,5bf0cd07b2ea7fa224a37f69232542a9e686c5bf,"Merge pull request #31 from theislab/template-update

Automated template update from cookiecutter-scverse",[![](https://github.com/theislab/geome/workflows/Sync%20Template/badge.svg)](https://github.com/theislab/geome/actions/runs/4904831582)
theislab,gh-dashboard,theislab/gh-dashboard,1,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,1,8fcd85721922bda53d114e2d742a9ffa8fa0877b,[status] 2023-11-18 12:08:55 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/6920310826)
theislab,gh-dashboard,theislab/gh-dashboard,1,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,1,5c51d192cefcd41925e9d2c43803ae8669667ee9,[status] 2023-11-19 12:08:46 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/6929784658)
theislab,graph_abstraction,theislab/graph_abstraction,26,8,0,10,FALSE,https://github.com/theislab/graph_abstraction,26,NA,NA,NA
theislab,greatpy,theislab/greatpy,8,3,4,0,FALSE,https://github.com/theislab/greatpy,8,NA,NA,NA
theislab,gut_lineage,theislab/gut_lineage,2,3,0,3,FALSE,https://github.com/theislab/gut_lineage,2,NA,NA,NA
@@ -150,6 +150,9 @@ theislab,intercode,theislab/intercode,6,3,1,1,FALSE,https://github.com/theislab/
theislab,ipsc_ipd_analysis,theislab/ipsc_ipd_analysis,0,3,0,0,FALSE,https://github.com/theislab/ipsc_ipd_analysis,0,NA,NA,NA
theislab,kBET,theislab/kBET,138,9,8,23,FALSE,https://github.com/theislab/kBET,138,NA,NA,NA
theislab,kbranches,theislab/kbranches,5,7,0,0,FALSE,https://github.com/theislab/kbranches,5,NA,NA,NA
theislab,moscot,theislab/moscot,72,4,39,6,FALSE,https://github.com/theislab/moscot,72,3a430200c0acbad9fad7b8d761bb6764ff2fdafe,"Merge pull request #624 from theislab/pre-commit-ci-update-config

[pre-commit.ci] pre-commit autoupdate",[![](https://github.com/theislab/moscot/workflows/Lint/badge.svg)](https://github.com/theislab/moscot/actions/runs/6923849525) [![](https://github.com/theislab/moscot/workflows/Test/badge.svg)](https://github.com/theislab/moscot/actions/runs/6923812148)
theislab,moscot,theislab/moscot,72,4,39,6,FALSE,https://github.com/theislab/moscot,72,b233601b6aecd7259aaa1a5dba107f2963420614,"Update/lrgw2 (#613)


@@ -161,7 +164,7 @@ theislab,moscot_benchmarks,theislab/moscot_benchmarks,1,2,1,0,FALSE,https://gith
theislab,moscot_not,theislab/moscot_not,2,2,8,0,FALSE,https://github.com/theislab/moscot_not,2,NA,NA,NA
theislab,moscot_notebooks,theislab/moscot_notebooks,6,1,4,2,FALSE,https://github.com/theislab/moscot_notebooks,6,bbca9f2b0243c4349e0cdd98c78af083251cfe9c,"Merge pull request #58 from theislab/fix/func_calls

small fixes for warnings and function calls",[![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/6844045475)
small fixes for warnings and function calls",[![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/6923869725)
theislab,moslin,theislab/moslin,9,1,0,1,FALSE,https://github.com/theislab/moslin,9,NA,NA,NA
theislab,mouse_cross-condition_pancreatic_islet_atlas,theislab/mouse_cross-condition_pancreatic_islet_atlas,6,2,0,3,FALSE,https://github.com/theislab/mouse_cross-condition_pancreatic_islet_atlas,6,NA,NA,NA
theislab,mubind,theislab/mubind,18,2,30,0,FALSE,https://github.com/theislab/mubind,18,NA,NA,NA
@@ -218,25 +221,25 @@ Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.gi
theislab,scarches,theislab/scarches,290,14,34,46,FALSE,https://github.com/theislab/scarches,290,NA,NA,NA
theislab,scarches_notebooks,theislab/scarches_notebooks,0,3,0,0,FALSE,https://github.com/theislab/scarches_notebooks,0,NA,NA,NA
theislab,scatac_poisson_reproducibility,theislab/scatac_poisson_reproducibility,5,3,0,0,FALSE,https://github.com/theislab/scatac_poisson_reproducibility,5,NA,NA,NA
theislab,scgen,theislab/scgen,234,10,19,51,FALSE,https://github.com/theislab/scgen,234,d79e1f04233c30f9a4eb5b8d57718127909807d7,Merge pull request #87 from theislab/batch_corr_labels,[![](https://github.com/theislab/scgen/workflows/scgen-test/badge.svg)](https://github.com/theislab/scgen/actions/runs/6370224484)
theislab,scgen,theislab/scgen,234,10,20,51,FALSE,https://github.com/theislab/scgen,234,d79e1f04233c30f9a4eb5b8d57718127909807d7,Merge pull request #87 from theislab/batch_corr_labels,[![](https://github.com/theislab/scgen/workflows/scgen-test/badge.svg)](https://github.com/theislab/scgen/actions/runs/6370224484)
theislab,scgen-reproducibility,theislab/scgen-reproducibility,18,4,5,8,FALSE,https://github.com/theislab/scgen-reproducibility,18,NA,NA,NA
theislab,scib,theislab/scib,242,17,29,49,FALSE,https://github.com/theislab/scib,NA,ed3e2846414ca1e3dc07552c0eef1e68d82230d4,Bump version: 1.1.3 → 1.1.4,[![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/5655324075)
theislab,scib-pipeline,theislab/scib-pipeline,42,7,14,26,FALSE,https://github.com/theislab/scib-pipeline,42,1180bcb35829d6d2984202268b4d1d11c511e20c,Merge branch 'fix/igraph_dependency' into rpy2_unpin,[![](https://github.com/theislab/scib-pipeline/workflows/Manual%20workflow/badge.svg)](https://github.com/theislab/scib-pipeline/actions/runs/4118363146)
theislab,scib-reproducibility,theislab/scib-reproducibility,43,6,2,11,FALSE,https://github.com/theislab/scib-reproducibility,43,NA,NA,NA
theislab,scvelo,theislab/scvelo,363,14,82,99,FALSE,https://github.com/theislab/scvelo,363,NA,NA,NA
theislab,scvelo,theislab/scvelo,363,14,84,99,FALSE,https://github.com/theislab/scvelo,363,NA,NA,NA
theislab,scvelo_notebooks,theislab/scvelo_notebooks,24,2,2,12,FALSE,https://github.com/theislab/scvelo_notebooks,24,NA,NA,NA
theislab,sfaira,theislab/sfaira,132,8,166,13,FALSE,https://github.com/theislab/sfaira,132,55bcbbf2588a08e4a98b1e65324119407ec6e75c,Merge pull request #741 from theislab/release,[![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6917073171)
theislab,sfaira,theislab/sfaira,132,8,166,13,FALSE,https://github.com/theislab/sfaira,132,55bcbbf2588a08e4a98b1e65324119407ec6e75c,Merge pull request #741 from theislab/release,[![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6923788525)
theislab,sfaira,theislab/sfaira,132,8,166,13,FALSE,https://github.com/theislab/sfaira,132,b06bf35d783b0c8f1dcd859d6568c3ad5124d2ab,fix load function,[![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6833382250) [![](https://github.com/theislab/sfaira/workflows/Create%20sfaira%20data-loader%20templates/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6833382248) [![](https://github.com/theislab/sfaira/workflows/Run%20bandit/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6833382247) [![](https://github.com/theislab/sfaira/workflows/Run%20flake8%20linting/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6833382245)
theislab,sfaira,theislab/sfaira,132,8,166,13,FALSE,https://github.com/theislab/sfaira,132,ceb14c946f699c38d18a32192b76d4639caf845e,fix download links,[![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/6812817430)
theislab,sfaira-portal,theislab/sfaira-portal,0,4,2,0,FALSE,https://github.com/theislab/sfaira-portal,0,NA,NA,NA
theislab,sfaira-site,theislab/sfaira-site,0,4,0,0,FALSE,https://github.com/theislab/sfaira-site,0,NA,NA,NA
theislab,sfaira_benchmarks,theislab/sfaira_benchmarks,0,3,0,0,FALSE,https://github.com/theislab/sfaira_benchmarks,0,NA,NA,NA
theislab,sfaira_extension,theislab/sfaira_extension,0,3,1,0,FALSE,https://github.com/theislab/sfaira_extension,0,NA,NA,NA
theislab,sfaira_tutorials,theislab/sfaira_tutorials,6,4,3,2,FALSE,https://github.com/theislab/sfaira_tutorials,6,NA,NA,NA
theislab,single-cell-best-practices,theislab/single-cell-best-practices,516,15,46,107,FALSE,https://github.com/theislab/single-cell-best-practices,516,544845a8bd1c191c67e93be67fbb57d31fbee4dc,"Fix tutorial link
theislab,single-cell-best-practices,theislab/single-cell-best-practices,517,15,46,107,FALSE,https://github.com/theislab/single-cell-best-practices,517,544845a8bd1c191c67e93be67fbb57d31fbee4dc,"Fix tutorial link

Signed-off-by: zethson <lukas.heumos@posteo.net>",[![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/6888355811) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/6888355832) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/6888355813) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/6888355815)
theislab,single-cell-best-practices,theislab/single-cell-best-practices,516,15,46,107,FALSE,https://github.com/theislab/single-cell-best-practices,516,c06ca90930bd6c34220a7df594ed477aec1d6a19,"scATAC part (#162)
theislab,single-cell-best-practices,theislab/single-cell-best-practices,517,15,46,107,FALSE,https://github.com/theislab/single-cell-best-practices,517,c06ca90930bd6c34220a7df594ed477aec1d6a19,"scATAC part (#162)

* scATAC_pp

@@ -350,8 +353,8 @@ Signed-off-by: zethson <lukas.heumos@posteo.net>
Co-authored-by: xlancelottx <christopher.lance94@gmail.com>
Co-authored-by: zethson <lukas.heumos@posteo.net>
Co-authored-by: Anna Schaar <anna.schaar@tum.de>",[![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952)
theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,2,1,0,0,FALSE,https://github.com/theislab/single-cell-transformer-papers,2,NA,NA,NA
theislab,single-cell-tutorial,theislab/single-cell-tutorial,1199,30,19,429,FALSE,https://github.com/theislab/single-cell-tutorial,1199,NA,NA,NA
theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,3,1,0,1,FALSE,https://github.com/theislab/single-cell-transformer-papers,3,NA,NA,NA
theislab,single-cell-tutorial,theislab/single-cell-tutorial,1201,30,19,429,FALSE,https://github.com/theislab/single-cell-tutorial,1201,NA,NA,NA
theislab,singlecell_proteomics,theislab/singlecell_proteomics,3,4,4,3,FALSE,https://github.com/theislab/singlecell_proteomics,3,NA,NA,NA
theislab,spapros,theislab/spapros,20,3,14,5,FALSE,https://github.com/theislab/spapros,20,642fb34d2ccbb1bb8730b239840bf1bfe06701f8,"[DEPENDABOT]: Bump importlib-resources from 5.12.0 to 6.1.1 in /docs

@@ -370,7 +373,7 @@ updated-dependencies:
Signed-off-by: dependabot[bot] <support@github.com>",[![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/6854088652) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/6854088648)
theislab,spapros,theislab/spapros,20,3,14,5,FALSE,https://github.com/theislab/spapros,20,c4c0903758ecb1acd0e16c1d227e59e8be1e28de,"Merge pull request #288 from theislab/development

Mention python package in docs",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/5980912686) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/6917539092)
Mention python package in docs",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/5980912686) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/6924342850)
theislab,spapros-pipeline,theislab/spapros-pipeline,7,2,0,0,FALSE,https://github.com/theislab/spapros-pipeline,7,NA,NA,NA
theislab,spapros-smk,theislab/spapros-smk,0,2,0,1,FALSE,https://github.com/theislab/spapros-smk,0,NA,NA,NA
theislab,spapros_reproducibility,theislab/spapros_reproducibility,0,1,1,0,FALSE,https://github.com/theislab/spapros_reproducibility,0,NA,NA,NA

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