[status] 2024-12-19 12:12:53 UTC

repos.csv

@@ -12,7 +12,7 @@ theislab,2022_Tritschler_pancreas_cross_species,theislab/2022_Tritschler_pancrea
 theislab,AutoGeneS,theislab/AutoGeneS,57,6,6,8,FALSE,https://github.com/theislab/AutoGeneS,57,NA,NA,NA
 theislab,CFGen,theislab/CFGen,6,1,0,4,FALSE,https://github.com/theislab/CFGen,6,NA,NA,NA
 theislab,Covid_meta_analysis,theislab/Covid_meta_analysis,24,8,2,11,FALSE,https://github.com/theislab/Covid_meta_analysis,24,NA,NA,NA
-theislab,DRVI,theislab/DRVI,33,1,2,3,FALSE,https://github.com/theislab/DRVI,33,NA,NA,NA
+theislab,DRVI,theislab/DRVI,34,1,2,3,FALSE,https://github.com/theislab/DRVI,34,NA,NA,NA
 theislab,DRVI_reproducibility,theislab/DRVI_reproducibility,2,3,0,1,FALSE,https://github.com/theislab/DRVI_reproducibility,2,NA,NA,NA
 theislab,DeepCollisionalCrossSection,theislab/DeepCollisionalCrossSection,14,5,1,6,FALSE,https://github.com/theislab/DeepCollisionalCrossSection,14,NA,NA,NA
 theislab,DeepRT,theislab/DeepRT,30,2,11,10,FALSE,https://github.com/theislab/DeepRT,30,NA,NA,NA
@@ -158,6 +158,7 @@ theislab,diffxpy,theislab/diffxpy,193,7,108,23,FALSE,https://github.com/theislab
 theislab,diffxpy_tutorials,theislab/diffxpy_tutorials,10,8,4,2,FALSE,https://github.com/theislab/diffxpy_tutorials,10,NA,NA,NA
 theislab,disent,theislab/disent,6,3,0,0,FALSE,https://github.com/theislab/disent,6,NA,NA,NA
 theislab,edgepy,theislab/edgepy,0,3,0,0,FALSE,https://github.com/theislab/edgepy,0,NA,NA,NA
+theislab,ehrapy,theislab/ehrapy,244,5,43,20,FALSE,https://github.com/theislab/ehrapy,244,02e343de3675138ae65b76498eea0948562e37b8,updated log logistic example,[![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/12395044447)
 theislab,ehrapy,theislab/ehrapy,244,5,43,20,FALSE,https://github.com/theislab/ehrapy,244,228ac1cf402623a2dd3f4c8b6ed26b37b2c7204b,"[pre-commit.ci] pre-commit autoupdate (#841)
 
 * [pre-commit.ci] pre-commit autoupdate
@@ -197,7 +198,7 @@ theislab,gastrulation_analysis,theislab/gastrulation_analysis,10,4,0,1,FALSE,htt
 theislab,geome,theislab/geome,16,3,3,4,FALSE,https://github.com/theislab/geome,16,402a0a8cdb442fee8666416e5f163c4098fa0c07,"Merge pull request #55 from theislab/fix/toarray
 
 Fix Sparse "".A"" Not Found",[![](https://github.com/theislab/geome/workflows/Test/badge.svg)](https://github.com/theislab/geome/actions/runs/10868284169)
-theislab,gh-dashboard,theislab/gh-dashboard,3,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,3,bdeb3d03fe1aec8d1e412129ce93e3826fda4449,[status] 2024-12-17 12:13:05 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/12392526207)
+theislab,gh-dashboard,theislab/gh-dashboard,3,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,3,b1ced55a2be1447ea690d69dca490515e3db97fa,[status] 2024-12-18 12:12:34 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/12412285633)
 theislab,graph_abstraction,theislab/graph_abstraction,26,8,0,10,FALSE,https://github.com/theislab/graph_abstraction,26,NA,NA,NA
 theislab,graphcompass,theislab/graphcompass,34,2,1,0,FALSE,https://github.com/theislab/graphcompass,34,7c455146402592d7ba73173a72d2abc4d5f7737b,initial commit,[![](https://github.com/theislab/graphcompass/workflows/Labeler/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989244) [![](https://github.com/theislab/graphcompass/workflows/Release/badge.svg)](https://github.com/theislab/graphcompass/actions/runs/7630989237)
 theislab,greatpy,theislab/greatpy,9,3,4,0,FALSE,https://github.com/theislab/greatpy,9,NA,NA,NA
@@ -217,7 +218,7 @@ theislab,jump-cpg0016-segmentation,theislab/jump-cpg0016-segmentation,8,1,2,0,FA
 theislab,kBET,theislab/kBET,155,8,9,23,FALSE,https://github.com/theislab/kBET,155,NA,NA,NA
 theislab,kbranches,theislab/kbranches,5,7,0,0,FALSE,https://github.com/theislab/kbranches,5,NA,NA,NA
 theislab,masterpraktikum_ssl_segmentation,theislab/masterpraktikum_ssl_segmentation,2,3,0,2,FALSE,https://github.com/theislab/masterpraktikum_ssl_segmentation,2,NA,NA,NA
-theislab,moscot,theislab/moscot,119,3,36,9,FALSE,https://github.com/theislab/moscot,119,29764d40f7f0ce3d160ae901caf6bbaeada89043,"Merge pull request #748 from theislab/refactor/handle-solve-args
+theislab,moscot,theislab/moscot,119,3,35,9,FALSE,https://github.com/theislab/moscot,119,29764d40f7f0ce3d160ae901caf6bbaeada89043,"Merge pull request #748 from theislab/refactor/handle-solve-args
 
 Refactor/handle solve args",[![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/12301003048)
 theislab,moscot-framework_reproducibility,theislab/moscot-framework_reproducibility,3,2,2,0,FALSE,https://github.com/theislab/moscot-framework_reproducibility,3,NA,NA,NA
@@ -243,7 +244,7 @@ theislab,nbconvertR,theislab/nbconvertR,3,3,1,2,FALSE,https://github.com/theisla
 theislab,ncem,theislab/ncem,104,6,28,13,FALSE,https://github.com/theislab/ncem,104,d03a0792b9ab6ea62d2715b57ce50fcf1a84967c,remove patsy dependency,[![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317399) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/6666317397)
 theislab,ncem_benchmarks,theislab/ncem_benchmarks,8,4,4,2,FALSE,https://github.com/theislab/ncem_benchmarks,8,NA,NA,NA
 theislab,ncem_tutorials,theislab/ncem_tutorials,12,4,6,0,FALSE,https://github.com/theislab/ncem_tutorials,12,NA,NA,NA
-theislab,neural_organoid_atlas,theislab/neural_organoid_atlas,23,6,3,4,FALSE,https://github.com/theislab/neural_organoid_atlas,23,NA,NA,NA
+theislab,neural_organoid_atlas,theislab/neural_organoid_atlas,24,6,3,4,FALSE,https://github.com/theislab/neural_organoid_atlas,24,NA,NA,NA
 theislab,nicheformer,theislab/nicheformer,70,5,14,3,FALSE,https://github.com/theislab/nicheformer,70,NA,NA,NA
 theislab,organoid_dexamethason_stimulation,theislab/organoid_dexamethason_stimulation,0,3,0,1,FALSE,https://github.com/theislab/organoid_dexamethason_stimulation,0,NA,NA,NA
 theislab,paga,theislab/paga,211,10,24,33,FALSE,https://github.com/theislab/paga,211,NA,NA,NA
@@ -288,12 +289,12 @@ updates:
 - [github.com/astral-sh/ruff-pre-commit: v0.8.2 → v0.8.3](https://github.com/astral-sh/ruff-pre-commit/compare/v0.8.2...v0.8.3)
 
 Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/12368693074)
-theislab,scarches,theislab/scarches,342,12,53,52,FALSE,https://github.com/theislab/scarches,342,NA,NA,NA
+theislab,scarches,theislab/scarches,342,12,54,52,FALSE,https://github.com/theislab/scarches,342,NA,NA,NA
 theislab,scarches_notebooks,theislab/scarches_notebooks,0,3,0,0,FALSE,https://github.com/theislab/scarches_notebooks,0,NA,NA,NA
 theislab,scatac_poisson_reproducibility,theislab/scatac_poisson_reproducibility,9,3,0,0,FALSE,https://github.com/theislab/scatac_poisson_reproducibility,9,NA,NA,NA
 theislab,scgen,theislab/scgen,276,9,28,56,FALSE,https://github.com/theislab/scgen,276,NA,NA,NA
 theislab,scgen-reproducibility,theislab/scgen-reproducibility,23,4,6,9,FALSE,https://github.com/theislab/scgen-reproducibility,23,NA,NA,NA
-theislab,scib,theislab/scib,317,14,41,63,FALSE,https://github.com/theislab/scib,NA,d35727305501f905424f19a0e95b61dcda61c460,"Bump actions/download-artifact from 3 to 4.1.7 in /.github/workflows (#415)
+theislab,scib,theislab/scib,318,14,41,63,FALSE,https://github.com/theislab/scib,NA,d35727305501f905424f19a0e95b61dcda61c460,"Bump actions/download-artifact from 3 to 4.1.7 in /.github/workflows (#415)
 
 * Bump actions/download-artifact from 3 to 4.1.7 in /.github/workflows
 
@@ -321,7 +322,7 @@ Signed-off-by: dependabot[bot] <support@github.com>
 Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 Co-authored-by: Michaela Müller <51025211+mumichae@users.noreply.github.com>
 Co-authored-by: Michaela Mueller <michaela.mueller@helmholtz-muenchen.de>",[![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/12184255455)
-theislab,scib-pipeline,theislab/scib-pipeline,66,7,16,28,FALSE,https://github.com/theislab/scib-pipeline,66,NA,NA,NA
+theislab,scib-pipeline,theislab/scib-pipeline,67,7,16,27,FALSE,https://github.com/theislab/scib-pipeline,67,NA,NA,NA
 theislab,scib-reproducibility,theislab/scib-reproducibility,55,6,4,13,FALSE,https://github.com/theislab/scib-reproducibility,55,NA,NA,NA
 theislab,scvelo,theislab/scvelo,420,13,62,104,FALSE,https://github.com/theislab/scvelo,420,22b6e7e6cdb3c321c5a1be4ab2f29486ba01ab4f,"Update logging (#1281)
 
@@ -356,7 +357,7 @@ theislab,sfaira-site,theislab/sfaira-site,0,4,0,0,FALSE,https://github.com/theis
 theislab,sfaira_benchmarks,theislab/sfaira_benchmarks,0,3,0,0,FALSE,https://github.com/theislab/sfaira_benchmarks,0,NA,NA,NA
 theislab,sfaira_extension,theislab/sfaira_extension,0,3,1,0,FALSE,https://github.com/theislab/sfaira_extension,0,NA,NA,NA
 theislab,sfaira_tutorials,theislab/sfaira_tutorials,6,4,4,2,FALSE,https://github.com/theislab/sfaira_tutorials,6,NA,NA,NA
-theislab,single-cell-best-practices,theislab/single-cell-best-practices,801,19,73,191,FALSE,https://github.com/theislab/single-cell-best-practices,801,343c7e0a9fa9dbe98283faba070cf1426dab71f3,"Fixed some typos (#303)
+theislab,single-cell-best-practices,theislab/single-cell-best-practices,802,19,73,192,FALSE,https://github.com/theislab/single-cell-best-practices,802,343c7e0a9fa9dbe98283faba070cf1426dab71f3,"Fixed some typos (#303)
 
 * fix additional ""does""
 
@@ -383,21 +384,12 @@ theislab,single-cell-best-practices,theislab/single-cell-best-practices,801,19,7
 * fix typo
 
 * fix typo",[![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292800) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292810) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292801) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/11664292802)
-theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,284,14,39,32,FALSE,https://github.com/theislab/single-cell-transformer-papers,284,26f72d6e58b9b0db92670871a9028f6815b4cf0d,"Fixed scChat  (#61)
-
-* Smaller Font Size
-
-* scChat
-
----------
-
-Co-authored-by: Paul O.-P <paulo.-p.@Pauls-MBP.fritz.box>
-Co-authored-by: Paul O.-P <paulo.-p.@Pauls-MacBook-Pro.local>",[![](https://github.com/theislab/single-cell-transformer-papers/workflows/Document%20Generation/badge.svg)](https://github.com/theislab/single-cell-transformer-papers/actions/runs/12391370661)
+theislab,single-cell-transformer-papers,theislab/single-cell-transformer-papers,285,15,41,33,FALSE,https://github.com/theislab/single-cell-transformer-papers,285,NA,NA,NA
 theislab,single-cell-tutorial,theislab/single-cell-tutorial,1420,30,21,466,FALSE,https://github.com/theislab/single-cell-tutorial,1420,NA,NA,NA
 theislab,singlecell_proteomics,theislab/singlecell_proteomics,5,5,6,3,FALSE,https://github.com/theislab/singlecell_proteomics,5,NA,NA,NA
 theislab,spapros,theislab/spapros,32,3,12,7,FALSE,https://github.com/theislab/spapros,32,1ec08e6809978021e7ad0d7b7ce4f5412f391f79,"Merge pull request #357 from theislab/scrinshot_probe_designer
 
-adapter tutorials to new framework",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703697) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/12384626323)
+adapter tutorials to new framework",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/11988703697) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/12404520264)
 theislab,spapros,theislab/spapros,32,3,12,7,FALSE,https://github.com/theislab/spapros,32,2f6c1ad9fdab44d29017e268ef215d18278f56b9,prints for identifying mem issues,[![](https://github.com/theislab/spapros/workflows/Build%20spapros%20Package/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589767) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589776) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589778) [![](https://github.com/theislab/spapros/workflows/Run%20spapros%20Tests/badge.svg)](https://github.com/theislab/spapros/actions/runs/12087589764)
 theislab,spapros-pipeline,theislab/spapros-pipeline,7,2,0,0,FALSE,https://github.com/theislab/spapros-pipeline,7,fe84cf66cf6cf9b8fb441c74d4c004c20d1003cf,Update readme to refer to spapros smk repo,[![](https://github.com/theislab/spapros-pipeline/workflows/Run%20Example/badge.svg)](https://github.com/theislab/spapros-pipeline/actions/runs/11988359512)
 theislab,spapros-smk,theislab/spapros-smk,0,2,0,1,FALSE,https://github.com/theislab/spapros-smk,0,NA,NA,NA
@@ -422,7 +414,7 @@ theislab,tissue_tensorflow,theislab/tissue_tensorflow,8,3,0,0,FALSE,https://gith
 theislab,trVAE,theislab/trVAE,56,6,3,12,FALSE,https://github.com/theislab/trVAE,56,NA,NA,NA
 theislab,trVAE_reproducibility,theislab/trVAE_reproducibility,6,3,2,7,FALSE,https://github.com/theislab/trVAE_reproducibility,6,NA,NA,NA
 theislab,transcription_factor_activity,theislab/transcription_factor_activity,1,1,5,1,FALSE,https://github.com/theislab/transcription_factor_activity,1,NA,NA,NA
-theislab,troutpy,theislab/troutpy,0,1,1,0,FALSE,https://github.com/theislab/troutpy,0,5ff3feff68205cb186dc00ad9e5d9bdb3b2f1712,notebooks_mod3,[![](https://github.com/theislab/troutpy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/troutpy/actions/runs/12389728034) [![](https://github.com/theislab/troutpy/workflows/Test/badge.svg)](https://github.com/theislab/troutpy/actions/runs/12389727940)
+theislab,troutpy,theislab/troutpy,0,1,1,0,FALSE,https://github.com/theislab/troutpy,0,9a1ba0f99a61fad65289dc88c336b376e17f8100,errors_correction4,[![](https://github.com/theislab/troutpy/workflows/Check%20Build/badge.svg)](https://github.com/theislab/troutpy/actions/runs/12411652129) [![](https://github.com/theislab/troutpy/workflows/Test/badge.svg)](https://github.com/theislab/troutpy/actions/runs/12411652130)
 theislab,trvaep,theislab/trvaep,9,3,0,6,FALSE,https://github.com/theislab/trvaep,9,NA,NA,NA
 theislab,txsim,theislab/txsim,3,2,40,0,FALSE,https://github.com/theislab/txsim,3,NA,NA,NA
 theislab,unbalanced_monge_maps_single_cell,theislab/unbalanced_monge_maps_single_cell,1,1,0,0,FALSE,https://github.com/theislab/unbalanced_monge_maps_single_cell,1,NA,NA,NA