Test deploy LegendMed Central

thehyve · Oct 5, 2018 · 0aa555c · 0aa555c
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diff --git a/LegendMedCentral/DataPulls.R b/LegendMedCentral/DataPulls.R
diff --git a/LegendMedCentral/LegendMedCentral.Rproj b/LegendMedCentral/LegendMedCentral.Rproj
@@ -0,0 +1,13 @@
+Version: 1.0
+
+RestoreWorkspace: Default
+SaveWorkspace: Default
+AlwaysSaveHistory: Default
+
+EnableCodeIndexing: Yes
+UseSpacesForTab: Yes
+NumSpacesForTab: 2
+Encoding: UTF-8
+
+RnwWeave: Sweave
+LaTeX: pdfLaTeX
diff --git a/LegendMedCentral/MyArticle.Rmd b/LegendMedCentral/MyArticle.Rmd
diff --git a/LegendMedCentral/MyArticle_cache/latex/__packages b/LegendMedCentral/MyArticle_cache/latex/__packages
@@ -0,0 +1,7 @@
+base
+shiny
+DatabaseConnector
+DT
+ggplot2
+knitr
+xtable
diff --git a/LegendMedCentral/MyArticle_cache/latex/attrition_plot_bb844da3fadeafe9509ca9d614b0f16a.RData b/LegendMedCentral/MyArticle_cache/latex/attrition_plot_bb844da3fadeafe9509ca9d614b0f16a.RData
diff --git a/LegendMedCentral/MyArticle_cache/latex/attrition_plot_bb844da3fadeafe9509ca9d614b0f16a.rdb b/LegendMedCentral/MyArticle_cache/latex/attrition_plot_bb844da3fadeafe9509ca9d614b0f16a.rdb
diff --git a/LegendMedCentral/MyArticle_cache/latex/attrition_plot_bb844da3fadeafe9509ca9d614b0f16a.rdx b/LegendMedCentral/MyArticle_cache/latex/attrition_plot_bb844da3fadeafe9509ca9d614b0f16a.rdx
diff --git a/LegendMedCentral/MyArticle_cache/latex/features_6d986e09d41579c8f9ee29fca5436df7.RData b/LegendMedCentral/MyArticle_cache/latex/features_6d986e09d41579c8f9ee29fca5436df7.RData
diff --git a/LegendMedCentral/MyArticle_cache/latex/features_6d986e09d41579c8f9ee29fca5436df7.rdb b/LegendMedCentral/MyArticle_cache/latex/features_6d986e09d41579c8f9ee29fca5436df7.rdb
diff --git a/LegendMedCentral/MyArticle_cache/latex/features_6d986e09d41579c8f9ee29fca5436df7.rdx b/LegendMedCentral/MyArticle_cache/latex/features_6d986e09d41579c8f9ee29fca5436df7.rdx
diff --git a/LegendMedCentral/MyArticle_cache/latex/outcomes_d4ffa24859cd40dfadb04e06d5ea9412.RData b/LegendMedCentral/MyArticle_cache/latex/outcomes_d4ffa24859cd40dfadb04e06d5ea9412.RData
diff --git a/LegendMedCentral/MyArticle_cache/latex/outcomes_d4ffa24859cd40dfadb04e06d5ea9412.rdb b/LegendMedCentral/MyArticle_cache/latex/outcomes_d4ffa24859cd40dfadb04e06d5ea9412.rdb
diff --git a/LegendMedCentral/MyArticle_cache/latex/outcomes_d4ffa24859cd40dfadb04e06d5ea9412.rdx b/LegendMedCentral/MyArticle_cache/latex/outcomes_d4ffa24859cd40dfadb04e06d5ea9412.rdx
diff --git a/LegendMedCentral/PlotsAndTables.R b/LegendMedCentral/PlotsAndTables.R
diff --git a/LegendMedCentral/Sweave.sty b/LegendMedCentral/Sweave.sty
@@ -0,0 +1,39 @@
+\NeedsTeXFormat{LaTeX2e}
+\ProvidesPackage{Sweave}{}
+
+\RequirePackage{ifthen}
+\newboolean{Sweave@gin}
+\setboolean{Sweave@gin}{true}
+\newboolean{Sweave@ae}
+\setboolean{Sweave@ae}{true}
+
+\DeclareOption{nogin}{\setboolean{Sweave@gin}{false}}
+\DeclareOption{noae}{\setboolean{Sweave@ae}{false}}
+\ProcessOptions
+
+\RequirePackage{graphicx,fancyvrb}
+\IfFileExists{upquote.sty}{\RequirePackage{upquote}}{}
+
+\ifthenelse{\boolean{Sweave@gin}}{\setkeys{Gin}{width=0.8\textwidth}}{}%
+\ifthenelse{\boolean{Sweave@ae}}{%
+  \RequirePackage[T1]{fontenc}  
+  \RequirePackage{ae}
+}{}%
+
+\DefineVerbatimEnvironment{Sinput}{Verbatim}{fontshape=sl}
+\DefineVerbatimEnvironment{Soutput}{Verbatim}{}
+\DefineVerbatimEnvironment{Scode}{Verbatim}{fontshape=sl}
+
+\newenvironment{Schunk}{}{}
+
+\newcommand{\Sconcordance}[1]{%
+  \ifx\pdfoutput\undefined%
+  \csname newcount\endcsname\pdfoutput\fi%
+  \ifcase\pdfoutput\special{#1}%
+  \else%
+   \begingroup%
+     \pdfcompresslevel=0%
+     \immediate\pdfobj stream{#1}%
+     \pdfcatalog{/SweaveConcordance \the\pdflastobj\space 0 R}%
+   \endgroup%
+  \fi}
diff --git a/LegendMedCentral/Table1Specs.csv b/LegendMedCentral/Table1Specs.csv
@@ -0,0 +1,9 @@
+label,analysisId,covariateIds
+Age group,3,
+Gender: female,1,8532001
+Race,4,
+Ethnicity,5,
+Medical history: General,210,4006969210;438409210;4212540210;255573210;201606210;4182210210;440383210;201820210;318800210;192671210;439727210;432867210;316866210;4104000210;433736210;80180210;255848210;140168210;4030518210;80809210;435783210;4279309210;81893210;81902210;197494210;4134440210
+Medical history: Cardiovascular disease,210,313217210;381591210;317576210;321588210;316139210;4185932210;321052210;440417210;444247210
+Medical history: Neoplasms,210,4044013210;432571210;40481902210;443392210;4112853210;4180790210;443388210;197508210;200962210
+Medication use,410,21601782410;21602796410;21604686410;21604389410;21603932410;21601387410;21602028410;21600960410;21601664410;21601744410;21601461410;21600046410;21603248410;21600712410;21603890410;21601853410;21604254410;21604489410;21604752410