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Jose branch merge (most up to date supereeg)#9

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joseJCS0 wants to merge 46 commits into
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jose
Open

Jose branch merge (most up to date supereeg)#9
joseJCS0 wants to merge 46 commits into
masterfrom
jose

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joseJCS0 and others added 30 commits June 3, 2025 11:55
change of place of deepdish so that it's included
Supereeg merger for slack integration
add supereeg_access.py to repo, for pipeline supereeg work
Update 12/5/25 (Added supereeg pipeline code plus minor bug fixes to supereeg pipeline)
Add sbatch file for pipeline and adjust pipeline for sbatch file and minor bigfixes
added txt to explain how to download and setup supereeg
updated recon_correlation notebook analysis in code_gellgate/notebooks
bug fixes to allow plot.py to work
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