master-branch-latest

Honor the configured code system when adding FHIR code translations

FhirR4.addTranslation took a code system, used it to look up a CodeMapper,
and then always emitted the ICD-10-CM system URI. It also only ever asked
for the ICD-10-CM mapper, so a map registered under any other
exporter.code_map.<system> key was loaded at startup and never consulted,
even though Exporter#loadCodeMappers documents that usage and gives CPT as
its example.

Apply every configured code map and label each translation with its own
system URI. Output for the shipped ICD-10-CM configuration is unchanged.

Also add the CPT system URI, match system names case-insensitively so that
names derived from configuration keys resolve, and hold the code mappers in
a TreeMap so that multiple maps are applied in a deterministic order.

v4.0.0

• Added support for US Core 7 in FHIR R4 exporter @Jammjammjamm
• Fixed display text for multiple codes @Jammjammjamm
• New Adolescent Idiopathic Scoliosis (AIS) module @Ritakoubeh
• Upgraded to Gradle 9 to add support for JDK 25, dropped support for JDK 11, minimum JDK 17 now required @dehall

v3.4.0

• Hypertension updates to better align onset age with statistics @jawalonoski
• Updates to SNOMED codes to replace outdated and inactive codes @florim14
• Support for mapping condition codes to ICD-10-CM in the FHIR R4 exporter @hadleynet
• Various Flexporter updates @dehall
• Defaults for missing data or configuration settings when using international configurations @jawalonoski
• Use COMPLETED instead of STOPPED for FHIR R4 MedicationRequest resources @jawalonoski
• CSV exporter allow both included and excluded files to be set @facuerrobidart
• Update Gradle and fix warnings @awatson1978 @KeeyanGhoreshi @Jammjammjamm
• Add labs and reports to clinical notes @jawalonoski
• Fix claim, provider and organization serialization @KeeyanGhoreshi
• Fix issue with duplicate UUIDs @dehall
• Fix CSV export claim transaction and payer transition referential integrity through memberId @jawalonoski
• Refactor CSV exporter and add support for splitting large CSV files @Jammjammjamm
• Use US Core 6 as default in FHIR exporter @Jammjammjamm
• Add donation message at end of patient generation @andrequina

v3.3.0

• Numerous bug fixes @jawalonoski, @hadleynet, @dehall, @eedrummer, @NinaLua, @jkiddo
• Improvements to RIF exporter @jawalonoski, @hadleynet
• Addition of Flexporter functionality (see https://github.com/synthetichealth/synthea/wiki/Flexporter) @dehall
• Addition of dental modules @jawalonoski, @hadleynet
• Addition of AWS Cloud Formation config file @pramod2804
• Performance improvements @arvindshmicrosoft
• Updates to UTI module @eedrummer
• Support for US Core 3.1.1 and 6.1.0 @dehall
• Add support for patient middle names @anikamk1828
• Add FHIR bulk data parameters file @jkiddo

v3.2.0

• Improvements to the RIF exporter: improve correlation between procedure and revenue centers, consolidate claim lines for same procedure, add support for PDPM codes, add total charge line items, improve BIC code assignments @hadleynet @jawalonoski
• Improvements to the CSV exporter: add FIPS county code and better matching to ZIP code @jawalonoski
• Improvements to the CCDA exporter: add functional status, fix vital signs
• Module updates: add maintenance and emergency inhaler submodules @jrlegrand, ESRD improvements @jawalonoski, add reasons for encounters @hadleynet
• Engine updates: virtual medicine transitions @eedrummer, exponential probability distribution @jawalonoski, rework insurance @RobertScalfani
• Improve graphviz integration @eedrummer
• New utility to map from BFD RIF export format to CCW RIF format
• FHIR USCore 5 support @dehall
• Numerous bug fixes and additional small feature additions

v3.1.1

Bug fix release. Add missing identifier in patient home's location FHIR resource (@jawalonoski).

v3.1.0

• HIV module enhancements - @jawalonoski
• New sleep apnea module - @jawalonoski
• New acute myeloid leukemia module - @casey7083
• New home health module - @jawalonoski
• New skilled nursing module - @jawalonoski
• New hospice module - @jawalonoski
• Refactor of metabolic syndrome module - @dehall
• New BFD RIF exporter - @hadleynet, @jawalonoski, @babraham33, @hkong, @cbrunefearless, Karen Bates
• New JSON exporter - @eedrummer
• Add support for USCore 4 to FHIR exporter - @jawalonoski
• Add support for patient middle names - @jawalonoski
• log4j security fix - @omarismail94
• Support for Java 17 - @dehall
• Updates to HAPI, MDHT and other dependencies - @jawalonoski, @eedrummer
• Autoscaling of generator thread pool - @hadleynet
• Ability to set simulation end date in the future events via -e flag - @hadleynet
• Numerous bug fixes - @eedrummer, @dehall, @jwalonoski, @mgramigna
• Test suite performance improvements and bug fixes - @eedrummer
• Documentation improvements - @eedrummer, @lmsurpre

v3.0.0

• Updated GMF to version 2. New features include specification of random distribution types (uniform, gaussian, exact) - @eedrummer
• Improvements to the CSV exporter including export of claims - @dehall
• Improvements to the C-CDA exporter, primarily bug fixes - @jawalonoski
• Addition of vaccines to COVID disease module - @eedrummer
• Metadata about a Synthea run is now exported to capture runtime specified parameters - @dehall
• Fixes to allow running of Synthea tasks from uberJar - @hadleynet, @dehall
• Numerous miscellaneous bug fixes and enhancements to Synthea code and disease modules - @eedrummer, @dehall, @jawalonoski

v2.7.0

• Numerous bug fixes
• Updates to service costs (@RobertScalfani)
• Updates to demographics and ZIP codes (@dehall)
• Update FHIR exporters to use HAPI 5.2 (@hadleynet, @dehall)
• Update FHIR exporters to include procedure codes for ImagingStudies (@eedrummer)
• Updates to Opiod Pain Management module (@yanheras)
• New Spina Bifida module (@yanheras)
• New Cerebral Palsy module (@casey7083)
• New Sepsis module (@casey7083)
• Improved FHIR transaction bundle export (@hadleynet)
• Updates to Hypertension module (@rutemartins)
• Switch CI to GitHub Actions (@dehall)

v2.6.1

Synthea V2.6.1 Release Notes

• Fix a bug where procedures with a delay could be recorded twice

Synthea V2.6.0 Release Notes

• Updates to FHIR R4 and US Core IG exporter to track latest version and add new vital signs (@jawalonoski, @LtSurgekopf)
• Add CPCDS exporter (@mosiermt)
• Additional physiology capabilities and export of media attachments (@nanowizard)
• Support for different output text encodings (@jcgeer)
• Added new Health Record Editor functionality (@eedrummer)
• Added Growth Data Errors editor (@eedrummer)
• Added support for snapshotting populations for later updates (@hadleynet)
• Added a COVID-19 module (@jeffeastman, @jawalonoski, @eedrummer, @dehall)
• Added a symptom exporter (@afansi)
• Added support for devices and supplies (@dehall)
• Classpath fix for SLF4J warning (@jaferkhan)
• Added value set based selection of codes (@johngrimes, @amol-wani-elimu, @kaicode)
• CQL engine updates (@pete-thompson, @jawalonoski)
• Improve reproducibility by refactoring use of randomness (@jawalonoski, @hadleynet)
• Build and runtime improvements (@johngrimes, @theo-m)