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@stjude-rust-labs

St. Jude Rust Labs

St. Jude's experimental Rust tools for the omics community.

St. Jude Rust Labs

St. Jude Rust Labs is a project at St. Jude Children's Research Hospital aimed at building a better foundation for omics analysis using Rust. See the individual repositories below for more information on what we're working on!

Disclaimer

St. Jude Rust Labs’ crates and command line applications may be used only for educational and basic research purposes and not for any other purpose. St. Jude Rust Labs’ crates and command line applications may not be used for diagnosis, medical care, or treatment of any patient, or for decision-making about any person (including assignment to a study or specific study arm or group), or to render medical advice or professional services. St. Jude Rust Labs’ crates and command line applications have not received approval or clearance by the U.S. Food and Drug Administration (FDA) or otherwise. St. Jude Rust Labs’ crates and command line applications are intended only to assist in research but not in decision-making about patients or research participants. The authors of the Rust Labs’ crates and command lines applications have no responsibility for any decisions made in the use of the crates and command line applications.

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  1. sprocket sprocket Public

    A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).

    Rust 139 51

  2. fq fq Public

    Command line utility for manipulating FASTQ files

    Rust 94 6

  3. crankshaft crankshaft Public

    A Rust-based, headless workflow execution framework supporting local, cloud, and HPC.

    Rust 50 24

  4. planetary planetary Public

    A Kubernetes-based task executor for the Task Execution Service (TES) specification.

    Rust 17 4

  5. sprocket-vscode sprocket-vscode Public

    Visual Studio Code extension for Sprocket.

    TypeScript 9 8

  6. sprocket-action sprocket-action Public

    Run Sprocket as part of a CI/CD pipeline with GitHub Actions.

    Shell 6 2

Repositories

Showing 10 of 22 repositories
  • sprocket-zed Public

    WDL language support for Zed via the Sprocket LSP.

    stjude-rust-labs/sprocket-zed’s past year of commit activity
    Rust 1 Apache-2.0 0 0 0 Updated Mar 20, 2026
  • planetary Public

    A Kubernetes-based task executor for the Task Execution Service (TES) specification.

    stjude-rust-labs/planetary’s past year of commit activity
    Rust 17 Apache-2.0 4 9 1 Updated Mar 20, 2026
  • tree-sitter-wdl Public

    Tree-sitter grammar for WDL.

    stjude-rust-labs/tree-sitter-wdl’s past year of commit activity
    C 1 Apache-2.0 0 0 0 Updated Mar 20, 2026
  • cloud-copy Public

    A cloud storage copy library and utility.

    stjude-rust-labs/cloud-copy’s past year of commit activity
    Rust 2 Apache-2.0 1 0 0 Updated Mar 20, 2026
  • chainfile Public

    A crate for working with genomics chain files.

    stjude-rust-labs/chainfile’s past year of commit activity
    Rust 15 Apache-2.0 3 0 0 Updated Mar 19, 2026
  • omics Public

    Foundations for the Rust omics ecosystem.

    stjude-rust-labs/omics’s past year of commit activity
    Rust 15 Apache-2.0 2 1 0 Updated Mar 19, 2026
  • sprocket Public

    A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).

    stjude-rust-labs/sprocket’s past year of commit activity
    Rust 139 Apache-2.0 51 82 (2 issues need help) 28 Updated Mar 19, 2026
  • omkit Public
    stjude-rust-labs/omkit’s past year of commit activity
    Rust 1 Apache-2.0 0 0 1 Updated Mar 18, 2026
  • sprocket.bio Public

    The website for the Sprocket workflow execution engine.

    stjude-rust-labs/sprocket.bio’s past year of commit activity
    Vue 0 1 1 1 Updated Mar 17, 2026
  • wdl-lints Public

    A website outlining the lints available in the `wdl` family of crates.

    stjude-rust-labs/wdl-lints’s past year of commit activity
    Rust 0 0 0 1 Updated Mar 13, 2026

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