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1. vnet-keras vnet-keras Public

   Bash and python scripts to run a keras-implemented V-Net 3D segmentation model.

   Python 9 4

2. scBSC scBSC Public

   Calculate spatial correlation between two genes of a Seurat-format spatial scRNA-seq data

   R 2

3. tumor-seg-web tumor-seg-web Public

   Brain tumor segmentation web service to predict the segmentation of 3D brain MRI images.

   Python 4

4. shahcompbio/hairloom shahcompbio/hairloom Public

   A tool for analyzing split reads (focusing on long-read data)

   Python

5. shahcompbio/igver shahcompbio/igver Public

   Automatically take IGV snapshots

   Python 1

6. shahcompbio/rustbam shahcompbio/rustbam Public

   Rust-powered BAM depth extraction with Python bindings

   Rust