Changed versions on yml

.github/workflows/check-bioc.yml

@@ -189,13 +189,13 @@ jobs:
         shell: Rscript {0}
 
       - name: Install covr
-        if: github.ref == 'refs/heads/devel' && env.run_covr == 'true' && runner.os == 'Linux'
+        if: github.ref == 'refs/heads/gh-actions' && env.run_covr == 'true' && runner.os == 'Linux'
         run: |
           remotes::install_cran("covr")
         shell: Rscript {0}
 
       - name: Install pkgdown
-        if: github.ref == 'refs/heads/devel' && env.run_pkgdown == 'true' && runner.os == 'Linux'
+        if: github.ref == 'refs/heads/gh-actions' && env.run_pkgdown == 'true' && runner.os == 'Linux'
         run: |
           remotes::install_cran("pkgdown")
         shell: Rscript {0}
@@ -236,17 +236,17 @@ jobs:
         shell: Rscript {0}
 
       - name: Test coverage
-        if: github.ref == 'refs/heads/devel' && env.run_covr == 'true' && runner.os == 'Linux'
+        if: github.ref == 'refs/heads/gh-actions' && env.run_covr == 'true' && runner.os == 'Linux'
         run: |
           covr::codecov()
         shell: Rscript {0}
 
       - name: Install package
-        if: github.ref == 'refs/heads/devel' && env.run_pkgdown == 'true' && runner.os == 'Linux'
+        if: github.ref == 'refs/heads/gh-actions' && env.run_pkgdown == 'true' && runner.os == 'Linux'
         run: R CMD INSTALL .
 
       - name: Deploy package
-        if: github.ref == 'refs/heads/devel' && env.run_pkgdown == 'true' && runner.os == 'Linux'
+        if: github.ref == 'refs/heads/gh-actions' && env.run_pkgdown == 'true' && runner.os == 'Linux'
         run: |
           git config --global user.email "[email protected]"
           git config --global user.name "GitHub Actions"

_pkgdown.yml

@@ -35,6 +35,7 @@ reference:
     - plotReadTotals
     - plotFastqcPCA
     - starts_with("plotSeq")
+    - summariseOverrep
     - writeHtmlReport
     - maxAdapterContent
     - fqName