packaging updates (#18)

* packaging updates

* symlink sqlfluff config to root dir

.sqlfluff

@@ -0,0 +1 @@
+cumulus_library/.sqlfluff

cumulus_library/.sqlfluff

@@ -0,0 +1,26 @@
+[sqlfluff]
+templater = jinja
+dialect = athena
+sql_file_exts = .sql,.sql.jinja
+# this rule overfires on athena nested arrays
+exclude_rules=references.from,structure.column_order
+max_line_length = 88
+
+[sqlfluff:indentation]
+template_blocks_indent = false
+
+[sqlfluff:rules:layout.long_lines]
+ignore_comment_lines = true
+
+[sqlfluff:rules:capitalisation.keywords]
+capitalisation_policy = upper
+
+[sqlfluff:templater:jinja:context]
+schema_name = test_schema
+table_name = test_table
+view_or_table_name = test_view_or_table
+view_or_table = TABLE
+prefix = Test
+dataset = [["foo","foo"],["bar","bar"]]
+table_cols = ["a","b"]
+col_type_list = ["a string","b string"]

cumulus_library/cli.py

@@ -131,7 +131,7 @@ def create_template(path: str) -> None:
 
     copy_lists = [
         ["studies/template/manifest.toml", "manifest.toml"],
-        ["../.sqlfluff", ".sqlfluff"],
+        [".sqlfluff", ".sqlfluff"],
     ]
     for source, dest in copy_lists:
         source_path = Path(Path(__file__).resolve().parents[0], source)

pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "cumulus-library"
-version = "0.1.0"
+version = "0.1.2"
 # In order to support 3.12, we wil need to refactor out load_module, which is
 # targeted for deprecation in that version.
 requires-python = ">= 3.9, <3.12"
@@ -21,7 +21,6 @@ dependencies = [
 description = "Clinical study SQL generation for data derived from bulk FHIR"
 readme = "README.md"
 license = { text="Apache License 2.0" }
-home-page = "https://smarthealthit.org/cumulus-a-universal-sidecar-for-a-smart-learning-healthcare-system/"
 keywords = ["FHIR", "SQL", "Health Informatics"]
 classifiers = [
     "License :: OSI Approved :: Apache Software License",
@@ -39,12 +38,17 @@ test = [
 ]
 
 [project.urls]
+Home = "https://smarthealthit.org/cumulus-a-universal-sidecar-for-a-smart-learning-healthcare-system/"
 Documentation = "https://docs.smarthealthit.org/cumulus/"
 Source = "https://github.com/smart-on-fhir/cumulus-library-core"
 
+
 [project.scripts]
 cumulus-library = "cumulus_library.cli:main"
 
 [build-system]
 requires = ["flit_core >=3.4,<4"]
 build-backend = "flit_core.buildapi"
+
+[tool.flit.sdist]
+include = [".sqlfluff"]