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Update README.rst
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h-2 authored Aug 26, 2024
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Expand Up @@ -41,15 +41,15 @@ Before you can search, you need to have an index. You can

% bin/lambda3 mkindexp -d db.fasta

*(in case you want to create a nucleotide index, instead use ``mkindexn``)*
*(in case you want to create a nucleotide index, instead use* ``mkindexn`` *)*

After that running Lambda is as simple as

::

% bin/lambda3 searchp -q query.fasta -i db.fasta.lambda
% bin/lambda3 searchp -q query.fasta -i db.fasta.lba

*(in case you want to perform a nucleotide search, instead use ``searchn``)*
*(in case you want to perform a nucleotide search, instead use* ``searchn`` *)*

For a list of options, see the help pages:

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