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Feat/biomass producibility #41

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Mar 18, 2025
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Rename function to avoid "test"
hgscott committed Mar 18, 2025
commit bb57ae8fbcb538574dfcf44548c094268e2bd375
2 changes: 1 addition & 1 deletion gem_utilities/biomass.py
Original file line number Diff line number Diff line change
@@ -58,7 +58,7 @@ def unlump_biomass(
return unlumped_compounds


def test_biomass_producibility(
def check_biomass_producibility(
model,
growth_phenotypes,
media_definitions,
4 changes: 2 additions & 2 deletions test/test_biomass.py
Original file line number Diff line number Diff line change
@@ -6,7 +6,7 @@
import pandas as pd
from cobra import Metabolite, Model, Reaction

from gem_utilities.biomass import test_biomass_producibility, unlump_biomass
from gem_utilities.biomass import check_biomass_producibility, unlump_biomass


class TestUnlumpBiomass(unittest.TestCase):
@@ -75,7 +75,7 @@ def test_biomass_producibility(self):
"""Test the test_biomass_producibility function using the E. coli core
model and a simple media definition"""
model = cobra.io.load_model("textbook")
test_biomass_producibility(
check_biomass_producibility(
model,
self.phenotypes_df,
self.media_definitions,