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@flying-sheep flying-sheep commented Jan 7, 2026

See scverse/cookiecutter-scverse#462

Also just use 3.14 as default test version, since a stable 3.14-compatible numba has been released.

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codecov bot commented Jan 7, 2026

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 78.01%. Comparing base (3cf6391) to head (ff439bf).
⚠️ Report is 1 commits behind head on main.
✅ All tests successful. No failed tests found.

Additional details and impacted files
@@            Coverage Diff             @@
##             main    #3936      +/-   ##
==========================================
+ Coverage   76.93%   78.01%   +1.07%     
==========================================
  Files         117      117              
  Lines       12460    12466       +6     
==========================================
+ Hits         9586     9725     +139     
+ Misses       2874     2741     -133     
Flag Coverage Δ
hatch-test.low-vers 77.33% <100.00%> (?)
hatch-test.pre 76.96% <100.00%> (+0.02%) ⬆️

Flags with carried forward coverage won't be shown. Click here to find out more.

Files with missing lines Coverage Δ
src/scanpy/external/pl.py 31.52% <100.00%> (-2.17%) ⬇️
src/scanpy/external/pp/__init__.py 100.00% <100.00%> (ø)
src/scanpy/external/pp/_harmony_integrate.py 50.00% <ø> (-2.95%) ⬇️
src/scanpy/plotting/_tools/scatterplots.py 83.52% <100.00%> (+0.39%) ⬆️

... and 8 files with indirect coverage changes

@flying-sheep flying-sheep added this to the 1.12.0 milestone Jan 7, 2026
@flying-sheep flying-sheep merged commit 45766a8 into main Jan 7, 2026
14 of 15 checks passed
@flying-sheep flying-sheep deleted the pa/docs-3.14 branch January 7, 2026 16:16
etlioglu pushed a commit to etlioglu/scanpy that referenced this pull request Jan 8, 2026
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2 participants