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gtca committed Jul 3, 2024
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v0.3.0
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This version comes with a notable change to the way the annotations of individual modalities are treated.
It implements pull/push interface for annotations with functions :func:`mudata.MuData.pull_obs`, :func:`mudata.MuData.pull_var`, :func:`mudata.MuData.push_obs`, and :func:`mudata.MuData.push_var`.

:func:`mudata.MuData.update` performance and behaviour have been generally improved.
For compatibility reasons, this release keeps the old behaviour of pulling annotations on read/update as default.
This will be changed in the next release. In order to adopt the new behaviour, use :func:`mudata.set_options` with `pull_on_update=False`.

This release also comes with new functionalities such as :func:`mudata.to_anndata` and :func:`mudata.to_mudata`.

:class:`mudata.MuData` objects now have a new ``.mod_names`` attribute. ``MuData.mod`` can be pretty-printed. Readers support ``fsspec``, and :func:`mudata.read_zarr` now supports ``mod-order``. The ``uns`` attribute now properly handled by the views.

v0.2.4
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This version brings compatibility with the numpy 2.0.0 release and the future anndata 0.11 release with dtype argument deprecation.

Requires anndata 0.10.8 or newer.

v0.2.3
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Fixes and improvements for backed objects, views, nested MuData objects, I/O and HTML representation.

Pandas 2.0 compatibility.

v0.2.2
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