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38 changes: 29 additions & 9 deletions src/ess/reflectometry/tools.py
Original file line number Diff line number Diff line change
Expand Up @@ -229,7 +229,7 @@ def cost(scaling_factors):

def combine_curves(
curves: Sequence[sc.DataArray],
q_bin_edges: sc.Variable | None = None,
q_bin_edges: sc.Variable,
) -> sc.DataArray:
'''Combines the given curves by interpolating them
on a 1d grid defined by :code:`q_bin_edges` and averaging
Expand Down Expand Up @@ -261,22 +261,42 @@ def combine_curves(
if len({c.coords['Q'].unit for c in curves}) != 1:
raise ValueError('The Q-coordinates must have the same unit for each curve')

r = _interpolate_on_qgrid(map(sc.values, curves), q_bin_edges).values
v = _interpolate_on_qgrid(map(sc.variances, curves), q_bin_edges).values
r = _interpolate_on_qgrid(map(sc.values, curves), q_bin_edges)
v = _interpolate_on_qgrid(map(sc.variances, curves), q_bin_edges)

v[v == 0] = np.nan
v = sc.where(v == 0, sc.scalar(np.nan, unit=v.unit), v)
inv_v = 1.0 / v
r_avg = np.nansum(r * inv_v, axis=0) / np.nansum(inv_v, axis=0)
v_avg = 1 / np.nansum(inv_v, axis=0)
return sc.DataArray(
r_avg = sc.nansum(r * inv_v, dim='curves') / sc.nansum(inv_v, dim='curves')
v_avg = 1 / sc.nansum(inv_v, dim='curves')

out = sc.DataArray(
data=sc.array(
dims='Q',
values=r_avg,
variances=v_avg,
values=r_avg.values,
variances=v_avg.values,
unit=next(iter(curves)).data.unit,
),
coords={'Q': q_bin_edges},
)
if any('Q_resolution' in c.coords for c in curves):
# This might need to be revisited. The question about how to combine curves
# with different Q-resolution is not completely resolved.
# However, in practice the difference in Q-resolution between different curves
# is small so it's not likely to make a big difference.
Comment on lines +282 to +285
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Maybe this should be discussed in the docstring instead?

q_res = (
sc.DataArray(
data=c.coords.get(
'Q_resolution', sc.full_like(c.coords['Q'], value=np.nan)
),
coords={'Q': c.coords['Q']},
)
for c in curves
)
qs = _interpolate_on_qgrid(q_res, q_bin_edges)
out.coords['Q_resolution'] = sc.nansum(qs * inv_v, dim='curves') / sc.nansum(
sc.where(sc.isnan(qs), sc.scalar(0.0, unit=inv_v.unit), inv_v), dim='curves'
)
return out


def orso_datasets_from_measurements(
Expand Down
23 changes: 23 additions & 0 deletions tests/tools_test.py
Original file line number Diff line number Diff line change
Expand Up @@ -146,6 +146,29 @@ def test_combined_curves():
)


@pytest.mark.filterwarnings("ignore:invalid value encountered in divide")
def test_combined_curves_resolution():
qgrid = sc.linspace('Q', 0, 1, 26)
data = sc.concat(
(
sc.ones(dims=['Q'], shape=[10], with_variances=True),
0.5 * sc.ones(dims=['Q'], shape=[15], with_variances=True),
),
dim='Q',
)
data.variances[:] = 0.1
curves = (
curve(data, 0, 0.3),
curve(0.5 * data, 0.2, 0.7),
curve(0.25 * data, 0.6, 1.0),
)
curves[0].coords['Q_resolution'] = sc.midpoints(curves[0].coords['Q']) / 5
combined = combine_curves(curves, qgrid)
assert 'Q_resolution' in combined.coords
assert combined.coords['Q_resolution'][0] == curves[0].coords['Q_resolution'][1]
assert sc.isnan(combined.coords['Q_resolution'][-1])


def test_linlogspace_linear():
q_lin = linlogspace(
dim='qz', edges=[0.008, 0.08], scale='linear', num=50, unit='1/angstrom'
Expand Down
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