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Feat: extract splice positions (exon boundaries) from alignment

enhancementNew feature or requestNew feature or request

Status: Open.

#84 In scholl-lab/plasmicheck;

· berntpopp opened on Jan 20, 2025

bug: jobs not finished in snakemake script (randomly, restart and they finish)

bugSomething isn't workingSomething isn't working

Status: Open.

#78 In scholl-lab/plasmicheck;

· berntpopp opened on Jan 20, 2025

Feature Request: Benchmarking Dataset Creation

enhancementNew feature or requestNew feature or request

Status: Open.

#72 In scholl-lab/plasmicheck;

· berntpopp opened on Aug 14, 2024

Feature Request: Normalize by Splice Junction Count

enhancementNew feature or requestNew feature or request

Status: Open.

#68 In scholl-lab/plasmicheck;

· berntpopp opened on Aug 14, 2024

Feature request: Correct cutoffs for exon count/CDS length (investigate methods)

enhancementNew feature or requestNew feature or request

Status: Open.

#50 In scholl-lab/plasmicheck;

· berntpopp opened on Aug 13, 2024

Feature request: Generate IGV sessions with references and BAMs

enhancementNew feature or requestNew feature or request

Status: Open.

#49 In scholl-lab/plasmicheck;

· berntpopp opened on Aug 13, 2024

Reserach: Explore machine learning for plasmid/human classification

enhancementNew feature or requestNew feature or request

Status: Open.

#44 In scholl-lab/plasmicheck;

· berntpopp opened on Aug 13, 2024

·  

Manuscript

docs: Better describe the tool's logic, also visually with graphs

enhancementNew feature or requestNew feature or request

Status: Open.

#35 In scholl-lab/plasmicheck;

· berntpopp opened on Aug 7, 2024

·  

minimum viable product (MVP)

docs: Provide detailed documentation with examples

enhancementNew feature or requestNew feature or request

Status: Open.

#34 In scholl-lab/plasmicheck;

· berntpopp opened on Aug 7, 2024

·  

minimum viable product (MVP)

feat: Automated versioning with each commit

enhancementNew feature or requestNew feature or request

Status: Open.

#31 In scholl-lab/plasmicheck;

· berntpopp opened on Aug 7, 2024

feat: Provide an interactive mode for easier interaction

enhancementNew feature or requestNew feature or request

Status: Open.

#25 In scholl-lab/plasmicheck;

· berntpopp opened on Aug 7, 2024

feat: Add test and validation data with synthetically spiked-in reads at different levels

enhancementNew feature or requestNew feature or request

Status: Open.

#24 In scholl-lab/plasmicheck;

· berntpopp opened on Aug 7, 2024

·  

Manuscript