This repo contains scripts used for spatial QC steps and can also be used for specific analysis steps

./scripts contains the following R scripts, details can be found within each script documentaitons

• crop_seurat_v1.R: allows user to crop (or keep) Seurat object FOV part or a dataframe
  • discussion can be found on Seurat issue here
• spatial_autocorr_moransI_v1.R: this runs spatial autocorrelation (Moran's I) using moranfast R package
• subset_obj_seurat_v2.R: optimized subset function that can subset Seurat object FOVs for when > 1 FOVs or samples are present
  • see this discussion and this issue