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Hi, I am wondering how the genes are ordered in each data matrix (9 in total, in assay "RNA", "SCT", "integrated", each has 3 slots including counts, data, scale.data). Are they ordered by variance for those data slots where the row dimension equal to the number of variable features? I also notice that even though the genes in SCT scale.slot are the same with integrated scale.data slot, the order has changed. Any reason for that? Many thanks! |
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The order of features in the matrix is arbitrary, they are not sorted by variance or anything like that |
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The order of features in the matrix is arbitrary, they are not sorted by variance or anything like that