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Merged
dasunpubudumal merged 4 commits into from
Jan 30, 2026
Merged

Rails 8.1 upgrade #1771

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549f17c
Update rails to version 8.1.2
depfu[bot] Jan 19, 2026
a6c39f7
Update sanger-jsonapi-resources to use a specific branch for Rails 8.…
dasunpubudumal Jan 26, 2026
11a6c8b
Upgrade
dasunpubudumal Jan 26, 2026
70ab8ae
Update sanger-jsonapi-resources to version 0.3.0 and remove git sourc…
dasunpubudumal Jan 27, 2026
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4 changes: 2 additions & 2 deletions Gemfile
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Expand Up @@ -14,8 +14,8 @@ gem 'mysql2'
gem 'puma' # Use Puma as the app server
gem 'rack-cors' # Use Rack CORS for handling CORS, making cross-origin AJAX possible
gem 'rack-session' # Use Rack Session for session management. Needed for flipper
gem 'rails', '~> 8.0.2'
gem 'sanger-jsonapi-resources', '~> 0.2.1'
gem 'rails', '~> 8.1.2'
gem 'sanger-jsonapi-resources', '~> 0.3.0'
gem 'syslog' # No longer part of the default gems in Ruby 3.4

group :development do
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158 changes: 81 additions & 77 deletions Gemfile.lock
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@@ -1,72 +1,75 @@
GEM
remote: https://rubygems.org/
specs:
actioncable (8.0.3)
actionpack (= 8.0.3)
activesupport (= 8.0.3)
action_text-trix (2.1.16)
railties
actioncable (8.1.2)
actionpack (= 8.1.2)
activesupport (= 8.1.2)
nio4r (~> 2.0)
websocket-driver (>= 0.6.1)
zeitwerk (~> 2.6)
actionmailbox (8.0.3)
actionpack (= 8.0.3)
activejob (= 8.0.3)
activerecord (= 8.0.3)
activestorage (= 8.0.3)
activesupport (= 8.0.3)
actionmailbox (8.1.2)
actionpack (= 8.1.2)
activejob (= 8.1.2)
activerecord (= 8.1.2)
activestorage (= 8.1.2)
activesupport (= 8.1.2)
mail (>= 2.8.0)
actionmailer (8.0.3)
actionpack (= 8.0.3)
actionview (= 8.0.3)
activejob (= 8.0.3)
activesupport (= 8.0.3)
actionmailer (8.1.2)
actionpack (= 8.1.2)
actionview (= 8.1.2)
activejob (= 8.1.2)
activesupport (= 8.1.2)
mail (>= 2.8.0)
rails-dom-testing (~> 2.2)
actionpack (8.0.3)
actionview (= 8.0.3)
activesupport (= 8.0.3)
actionpack (8.1.2)
actionview (= 8.1.2)
activesupport (= 8.1.2)
nokogiri (>= 1.8.5)
rack (>= 2.2.4)
rack-session (>= 1.0.1)
rack-test (>= 0.6.3)
rails-dom-testing (~> 2.2)
rails-html-sanitizer (~> 1.6)
useragent (~> 0.16)
actiontext (8.0.3)
actionpack (= 8.0.3)
activerecord (= 8.0.3)
activestorage (= 8.0.3)
activesupport (= 8.0.3)
actiontext (8.1.2)
action_text-trix (~> 2.1.15)
actionpack (= 8.1.2)
activerecord (= 8.1.2)
activestorage (= 8.1.2)
activesupport (= 8.1.2)
globalid (>= 0.6.0)
nokogiri (>= 1.8.5)
actionview (8.0.3)
activesupport (= 8.0.3)
actionview (8.1.2)
activesupport (= 8.1.2)
builder (~> 3.1)
erubi (~> 1.11)
rails-dom-testing (~> 2.2)
rails-html-sanitizer (~> 1.6)
activejob (8.0.3)
activesupport (= 8.0.3)
activejob (8.1.2)
activesupport (= 8.1.2)
globalid (>= 0.3.6)
activemodel (8.0.3)
activesupport (= 8.0.3)
activerecord (8.0.3)
activemodel (= 8.0.3)
activesupport (= 8.0.3)
activemodel (8.1.2)
activesupport (= 8.1.2)
activerecord (8.1.2)
activemodel (= 8.1.2)
activesupport (= 8.1.2)
timeout (>= 0.4.0)
activestorage (8.0.3)
actionpack (= 8.0.3)
activejob (= 8.0.3)
activerecord (= 8.0.3)
activesupport (= 8.0.3)
activestorage (8.1.2)
actionpack (= 8.1.2)
activejob (= 8.1.2)
activerecord (= 8.1.2)
activesupport (= 8.1.2)
marcel (~> 1.0)
activesupport (8.0.3)
activesupport (8.1.2)
base64
benchmark (>= 0.3)
bigdecimal
concurrent-ruby (~> 1.0, >= 1.3.1)
connection_pool (>= 2.2.5)
drb
i18n (>= 1.6, < 2)
json
logger (>= 1.4.2)
minitest (>= 5.1)
securerandom (>= 0.3)
Expand All @@ -79,7 +82,6 @@ GEM
avro (1.12.1)
multi_json (~> 1.0)
base64 (0.3.0)
benchmark (0.5.0)
bigdecimal (4.0.1)
bootsnap (1.20.1)
msgpack (~> 1.2)
Expand All @@ -103,10 +105,10 @@ GEM
activerecord (>= 5.a)
database_cleaner-core (~> 2.0.0)
database_cleaner-core (2.0.1)
date (3.4.1)
date (3.5.1)
diff-lcs (1.6.2)
drb (2.2.3)
erb (5.0.2)
erb (6.0.1)
erubi (1.13.1)
exception_notification (5.0.1)
actionmailer (>= 7.1, < 9)
Expand Down Expand Up @@ -137,8 +139,8 @@ GEM
hashdiff (1.2.1)
i18n (1.14.8)
concurrent-ruby (~> 1.0)
io-console (0.8.1)
irb (1.15.2)
io-console (0.8.2)
irb (1.16.0)
pp (>= 0.6.0)
rdoc (>= 4.0.0)
reline (>= 0.4.2)
Expand All @@ -149,10 +151,11 @@ GEM
rb-fsevent (~> 0.10, >= 0.10.3)
rb-inotify (~> 0.9, >= 0.9.10)
logger (1.7.0)
loofah (2.24.1)
loofah (2.25.0)
crass (~> 1.0.2)
nokogiri (>= 1.12.0)
mail (2.8.1)
mail (2.9.0)
logger
mini_mime (>= 0.1.1)
net-imap
net-pop
Expand All @@ -167,7 +170,7 @@ GEM
multi_json (1.17.0)
mysql2 (0.5.7)
bigdecimal
net-imap (0.5.10)
net-imap (0.6.2)
date
net-protocol
net-pop (0.1.2)
Expand All @@ -177,23 +180,23 @@ GEM
net-smtp (0.5.1)
net-protocol
nio4r (2.7.5)
nokogiri (1.18.10)
nokogiri (1.19.0)
mini_portile2 (~> 2.8.2)
racc (~> 1.4)
parallel (1.27.0)
parser (3.3.10.0)
ast (~> 2.4.1)
racc
pp (0.6.2)
pp (0.6.3)
prettyprint
prettyprint (0.2.0)
prism (1.7.0)
prism (1.8.0)
pry (0.15.2)
coderay (~> 1.1)
method_source (~> 1.0)
pry-rails (0.3.11)
pry (>= 0.13.0)
psych (5.2.6)
psych (5.3.1)
date
stringio
public_suffix (6.0.2)
Expand All @@ -213,22 +216,22 @@ GEM
rack (>= 3.0.0)
rack-test (2.2.0)
rack (>= 1.3)
rackup (2.2.1)
rackup (2.3.1)
rack (>= 3)
rails (8.0.3)
actioncable (= 8.0.3)
actionmailbox (= 8.0.3)
actionmailer (= 8.0.3)
actionpack (= 8.0.3)
actiontext (= 8.0.3)
actionview (= 8.0.3)
activejob (= 8.0.3)
activemodel (= 8.0.3)
activerecord (= 8.0.3)
activestorage (= 8.0.3)
activesupport (= 8.0.3)
rails (8.1.2)
actioncable (= 8.1.2)
actionmailbox (= 8.1.2)
actionmailer (= 8.1.2)
actionpack (= 8.1.2)
actiontext (= 8.1.2)
actionview (= 8.1.2)
activejob (= 8.1.2)
activemodel (= 8.1.2)
activerecord (= 8.1.2)
activestorage (= 8.1.2)
activesupport (= 8.1.2)
bundler (>= 1.15.0)
railties (= 8.0.3)
railties (= 8.1.2)
rails-dom-testing (2.3.0)
activesupport (>= 5.0.0)
minitest
Expand All @@ -241,26 +244,27 @@ GEM
rails-html-sanitizer (1.6.2)
loofah (~> 2.21)
nokogiri (>= 1.15.7, != 1.16.7, != 1.16.6, != 1.16.5, != 1.16.4, != 1.16.3, != 1.16.2, != 1.16.1, != 1.16.0.rc1, != 1.16.0)
railties (8.0.3)
actionpack (= 8.0.3)
activesupport (= 8.0.3)
railties (8.1.2)
actionpack (= 8.1.2)
activesupport (= 8.1.2)
irb (~> 1.13)
rackup (>= 1.0.0)
rake (>= 12.2)
thor (~> 1.0, >= 1.2.2)
tsort (>= 0.2)
zeitwerk (~> 2.6)
rainbow (3.1.1)
rake (13.3.0)
rake (13.3.1)
rb-fsevent (0.11.2)
rb-inotify (0.10.1)
ffi (~> 1.0)
rbtree (0.4.6)
rdoc (6.14.2)
rdoc (7.1.0)
erb
psych (>= 4.0.0)
tsort
regexp_parser (2.11.3)
reline (0.6.2)
reline (0.6.3)
io-console (~> 0.5)
rexml (3.4.4)
rspec-core (3.13.5)
Expand Down Expand Up @@ -309,7 +313,7 @@ GEM
ruby-graphviz (1.2.5)
rexml
ruby-progressbar (1.13.0)
sanger-jsonapi-resources (0.2.1)
sanger-jsonapi-resources (0.3.0)
activerecord (>= 5.1)
concurrent-ruby
railties (>= 5.1)
Expand All @@ -327,11 +331,11 @@ GEM
spring-watcher-listen (2.1.0)
listen (>= 2.7, < 4.0)
spring (>= 4)
stringio (3.1.7)
stringio (3.2.0)
syslog (0.3.0)
logger
thor (1.4.0)
timeout (0.4.3)
thor (1.5.0)
timeout (0.6.0)
tsort (0.2.0)
tzinfo (2.0.6)
concurrent-ruby (~> 1.0)
Expand All @@ -349,7 +353,7 @@ GEM
websocket-extensions (>= 0.1.0)
websocket-extensions (0.1.5)
yard (0.9.38)
zeitwerk (2.7.3)
zeitwerk (2.7.4)

PLATFORMS
ruby
Expand All @@ -373,14 +377,14 @@ DEPENDENCIES
puma
rack-cors
rack-session
rails (~> 8.0.2)
rails (~> 8.1.2)
rails-erd
rspec-rails
rubocop
rubocop-factory_bot
rubocop-rails
rubocop-rspec
sanger-jsonapi-resources (~> 0.2.1)
sanger-jsonapi-resources (~> 0.3.0)
shoulda-matchers
spring
spring-watcher-listen
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6 changes: 6 additions & 0 deletions bin/ci
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@@ -0,0 +1,6 @@
#!/usr/bin/env ruby
require_relative "../config/boot"
require "active_support/continuous_integration"

CI = ActiveSupport::ContinuousIntegration
require_relative "../config/ci.rb"
17 changes: 17 additions & 0 deletions config/ci.rb
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@@ -0,0 +1,17 @@
# frozen_string_literal: true

# Run using bin/ci

CI.run do
step 'Setup', 'bin/setup --skip-server'

step 'Style: Ruby', 'bin/rubocop'

# Optional: set a green GitHub commit status to unblock PR merge.
# Requires the `gh` CLI and `gh extension install basecamp/gh-signoff`.
# if success?
# step "Signoff: All systems go. Ready for merge and deploy.", "gh signoff"
# else
# failure "Signoff: CI failed. Do not merge or deploy.", "Fix the issues and try again."
# end
end