Merge pull request #1771 from sanger/rails-8.1-upgrade

Rails 8.1 upgrade

Author: dasunpubudumal

Gemfile

@@ -14,8 +14,8 @@ gem 'mysql2'
 gem 'puma' # Use Puma as the app server
 gem 'rack-cors' # Use Rack CORS for handling CORS, making cross-origin AJAX possible
 gem 'rack-session' # Use Rack Session for session management. Needed for flipper
-gem 'rails', '~> 8.0.2'
-gem 'sanger-jsonapi-resources', '~> 0.2.1'
+gem 'rails', '~> 8.1.2'
+gem 'sanger-jsonapi-resources', '~> 0.3.0'
 gem 'syslog' # No longer part of the default gems in Ruby 3.4
 
 group :development do

Gemfile.lock

@@ -1,72 +1,75 @@
 GEM
   remote: https://rubygems.org/
   specs:
-    actioncable (8.0.3)
-      actionpack (= 8.0.3)
-      activesupport (= 8.0.3)
+    action_text-trix (2.1.16)
+      railties
+    actioncable (8.1.2)
+      actionpack (= 8.1.2)
+      activesupport (= 8.1.2)
       nio4r (~> 2.0)
       websocket-driver (>= 0.6.1)
       zeitwerk (~> 2.6)
-    actionmailbox (8.0.3)
-      actionpack (= 8.0.3)
-      activejob (= 8.0.3)
-      activerecord (= 8.0.3)
-      activestorage (= 8.0.3)
-      activesupport (= 8.0.3)
+    actionmailbox (8.1.2)
+      actionpack (= 8.1.2)
+      activejob (= 8.1.2)
+      activerecord (= 8.1.2)
+      activestorage (= 8.1.2)
+      activesupport (= 8.1.2)
       mail (>= 2.8.0)
-    actionmailer (8.0.3)
-      actionpack (= 8.0.3)
-      actionview (= 8.0.3)
-      activejob (= 8.0.3)
-      activesupport (= 8.0.3)
+    actionmailer (8.1.2)
+      actionpack (= 8.1.2)
+      actionview (= 8.1.2)
+      activejob (= 8.1.2)
+      activesupport (= 8.1.2)
       mail (>= 2.8.0)
       rails-dom-testing (~> 2.2)
-    actionpack (8.0.3)
-      actionview (= 8.0.3)
-      activesupport (= 8.0.3)
+    actionpack (8.1.2)
+      actionview (= 8.1.2)
+      activesupport (= 8.1.2)
       nokogiri (>= 1.8.5)
       rack (>= 2.2.4)
       rack-session (>= 1.0.1)
       rack-test (>= 0.6.3)
       rails-dom-testing (~> 2.2)
       rails-html-sanitizer (~> 1.6)
       useragent (~> 0.16)
-    actiontext (8.0.3)
-      actionpack (= 8.0.3)
-      activerecord (= 8.0.3)
-      activestorage (= 8.0.3)
-      activesupport (= 8.0.3)
+    actiontext (8.1.2)
+      action_text-trix (~> 2.1.15)
+      actionpack (= 8.1.2)
+      activerecord (= 8.1.2)
+      activestorage (= 8.1.2)
+      activesupport (= 8.1.2)
       globalid (>= 0.6.0)
       nokogiri (>= 1.8.5)
-    actionview (8.0.3)
-      activesupport (= 8.0.3)
+    actionview (8.1.2)
+      activesupport (= 8.1.2)
       builder (~> 3.1)
       erubi (~> 1.11)
       rails-dom-testing (~> 2.2)
       rails-html-sanitizer (~> 1.6)
-    activejob (8.0.3)
-      activesupport (= 8.0.3)
+    activejob (8.1.2)
+      activesupport (= 8.1.2)
       globalid (>= 0.3.6)
-    activemodel (8.0.3)
-      activesupport (= 8.0.3)
-    activerecord (8.0.3)
-      activemodel (= 8.0.3)
-      activesupport (= 8.0.3)
+    activemodel (8.1.2)
+      activesupport (= 8.1.2)
+    activerecord (8.1.2)
+      activemodel (= 8.1.2)
+      activesupport (= 8.1.2)
       timeout (>= 0.4.0)
-    activestorage (8.0.3)
-      actionpack (= 8.0.3)
-      activejob (= 8.0.3)
-      activerecord (= 8.0.3)
-      activesupport (= 8.0.3)
+    activestorage (8.1.2)
+      actionpack (= 8.1.2)
+      activejob (= 8.1.2)
+      activerecord (= 8.1.2)
+      activesupport (= 8.1.2)
       marcel (~> 1.0)
-    activesupport (8.0.3)
+    activesupport (8.1.2)
       base64
-      benchmark (>= 0.3)
       bigdecimal
       concurrent-ruby (~> 1.0, >= 1.3.1)
       connection_pool (>= 2.2.5)
       drb
       i18n (>= 1.6, < 2)
+      json
       logger (>= 1.4.2)
       minitest (>= 5.1)
       securerandom (>= 0.3)
@@ -79,7 +82,6 @@ GEM
     avro (1.12.1)
       multi_json (~> 1.0)
     base64 (0.3.0)
-    benchmark (0.5.0)
     bigdecimal (4.0.1)
     bootsnap (1.21.1)
       msgpack (~> 1.2)
@@ -104,10 +106,10 @@ GEM
       activerecord (>= 5.a)
       database_cleaner-core (~> 2.0.0)
     database_cleaner-core (2.0.1)
-    date (3.4.1)
+    date (3.5.1)
     diff-lcs (1.6.2)
     drb (2.2.3)
-    erb (5.0.2)
+    erb (6.0.1)
     erubi (1.13.1)
     exception_notification (5.0.1)
       actionmailer (>= 7.1, < 9)
@@ -138,8 +140,8 @@ GEM
     hashdiff (1.2.1)
     i18n (1.14.8)
       concurrent-ruby (~> 1.0)
-    io-console (0.8.1)
-    irb (1.15.2)
+    io-console (0.8.2)
+    irb (1.16.0)
       pp (>= 0.6.0)
       rdoc (>= 4.0.0)
       reline (>= 0.4.2)
@@ -151,10 +153,11 @@ GEM
       rb-fsevent (~> 0.10, >= 0.10.3)
       rb-inotify (~> 0.9, >= 0.9.10)
     logger (1.7.0)
-    loofah (2.24.1)
+    loofah (2.25.0)
       crass (~> 1.0.2)
       nokogiri (>= 1.12.0)
-    mail (2.8.1)
+    mail (2.9.0)
+      logger
       mini_mime (>= 0.1.1)
       net-imap
       net-pop
@@ -169,7 +172,7 @@ GEM
     multi_json (1.17.0)
     mysql2 (0.5.7)
       bigdecimal
-    net-imap (0.5.10)
+    net-imap (0.6.2)
       date
       net-protocol
     net-pop (0.1.2)
@@ -179,14 +182,14 @@ GEM
     net-smtp (0.5.1)
       net-protocol
     nio4r (2.7.5)
-    nokogiri (1.18.10)
+    nokogiri (1.19.0)
       mini_portile2 (~> 2.8.2)
       racc (~> 1.4)
     parallel (1.27.0)
     parser (3.3.10.1)
       ast (~> 2.4.1)
       racc
-    pp (0.6.2)
+    pp (0.6.3)
       prettyprint
     prettyprint (0.2.0)
     prism (1.8.0)
@@ -195,7 +198,7 @@ GEM
       method_source (~> 1.0)
     pry-rails (0.3.11)
       pry (>= 0.13.0)
-    psych (5.2.6)
+    psych (5.3.1)
       date
       stringio
     public_suffix (6.0.2)
@@ -215,22 +218,22 @@ GEM
       rack (>= 3.0.0)
     rack-test (2.2.0)
       rack (>= 1.3)
-    rackup (2.2.1)
+    rackup (2.3.1)
       rack (>= 3)
-    rails (8.0.3)
-      actioncable (= 8.0.3)
-      actionmailbox (= 8.0.3)
-      actionmailer (= 8.0.3)
-      actionpack (= 8.0.3)
-      actiontext (= 8.0.3)
-      actionview (= 8.0.3)
-      activejob (= 8.0.3)
-      activemodel (= 8.0.3)
-      activerecord (= 8.0.3)
-      activestorage (= 8.0.3)
-      activesupport (= 8.0.3)
+    rails (8.1.2)
+      actioncable (= 8.1.2)
+      actionmailbox (= 8.1.2)
+      actionmailer (= 8.1.2)
+      actionpack (= 8.1.2)
+      actiontext (= 8.1.2)
+      actionview (= 8.1.2)
+      activejob (= 8.1.2)
+      activemodel (= 8.1.2)
+      activerecord (= 8.1.2)
+      activestorage (= 8.1.2)
+      activesupport (= 8.1.2)
       bundler (>= 1.15.0)
-      railties (= 8.0.3)
+      railties (= 8.1.2)
     rails-dom-testing (2.3.0)
       activesupport (>= 5.0.0)
       minitest
@@ -243,26 +246,27 @@ GEM
     rails-html-sanitizer (1.6.2)
       loofah (~> 2.21)
       nokogiri (>= 1.15.7, != 1.16.7, != 1.16.6, != 1.16.5, != 1.16.4, != 1.16.3, != 1.16.2, != 1.16.1, != 1.16.0.rc1, != 1.16.0)
-    railties (8.0.3)
-      actionpack (= 8.0.3)
-      activesupport (= 8.0.3)
+    railties (8.1.2)
+      actionpack (= 8.1.2)
+      activesupport (= 8.1.2)
       irb (~> 1.13)
       rackup (>= 1.0.0)
       rake (>= 12.2)
       thor (~> 1.0, >= 1.2.2)
       tsort (>= 0.2)
       zeitwerk (~> 2.6)
     rainbow (3.1.1)
-    rake (13.3.0)
+    rake (13.3.1)
     rb-fsevent (0.11.2)
     rb-inotify (0.11.1)
       ffi (~> 1.0)
     rbtree (0.4.6)
-    rdoc (6.14.2)
+    rdoc (7.1.0)
       erb
       psych (>= 4.0.0)
+      tsort
     regexp_parser (2.11.3)
-    reline (0.6.2)
+    reline (0.6.3)
       io-console (~> 0.5)
     rexml (3.4.4)
     rspec-core (3.13.5)
@@ -311,7 +315,7 @@ GEM
     ruby-graphviz (1.2.5)
       rexml
     ruby-progressbar (1.13.0)
-    sanger-jsonapi-resources (0.2.1)
+    sanger-jsonapi-resources (0.3.0)
       activerecord (>= 5.1)
       concurrent-ruby
       railties (>= 5.1)
@@ -329,11 +333,11 @@ GEM
     spring-watcher-listen (2.1.0)
       listen (>= 2.7, < 4.0)
       spring (>= 4)
-    stringio (3.1.7)
+    stringio (3.2.0)
     syslog (0.3.0)
       logger
-    thor (1.4.0)
-    timeout (0.4.3)
+    thor (1.5.0)
+    timeout (0.6.0)
     tsort (0.2.0)
     tzinfo (2.0.6)
       concurrent-ruby (~> 1.0)
@@ -351,7 +355,7 @@ GEM
       websocket-extensions (>= 0.1.0)
     websocket-extensions (0.1.5)
     yard (0.9.38)
-    zeitwerk (2.7.3)
+    zeitwerk (2.7.4)
 
 PLATFORMS
   ruby
@@ -375,14 +379,14 @@ DEPENDENCIES
   puma
   rack-cors
   rack-session
-  rails (~> 8.0.2)
+  rails (~> 8.1.2)
   rails-erd
   rspec-rails
   rubocop
   rubocop-factory_bot
   rubocop-rails
   rubocop-rspec
-  sanger-jsonapi-resources (~> 0.2.1)
+  sanger-jsonapi-resources (~> 0.3.0)
   shoulda-matchers
   spring
   spring-watcher-listen

bin/ci

@@ -0,0 +1,6 @@
+#!/usr/bin/env ruby
+require_relative "../config/boot"
+require "active_support/continuous_integration"
+
+CI = ActiveSupport::ContinuousIntegration
+require_relative "../config/ci.rb"

config/ci.rb

@@ -0,0 +1,17 @@
+# frozen_string_literal: true
+
+# Run using bin/ci
+
+CI.run do
+  step 'Setup', 'bin/setup --skip-server'
+
+  step 'Style: Ruby', 'bin/rubocop'
+
+  # Optional: set a green GitHub commit status to unblock PR merge.
+  # Requires the `gh` CLI and `gh extension install basecamp/gh-signoff`.
+  # if success?
+  #   step "Signoff: All systems go. Ready for merge and deploy.", "gh signoff"
+  # else
+  #   failure "Signoff: CI failed. Do not merge or deploy.", "Fix the issues and try again."
+  # end
+end