Issues

• getting and formatting dnaA gene data

  sanger-pathogens/circlator#193 · Filter by author colindaven opened on Jan 27, 2026

• No thread setting

  sanger-pathogens/circlator#191 · Filter by author xubiy opened on Sep 12, 2024

• circlator Command Fails with ModuleNotFoundError: No module named 'pkg_resources'

  sanger-pathogens/circlator#190 · Filter by author AymanMkhalifa opened on Jul 25, 2024
  1

• Would circulator change the assembly?

  sanger-pathogens/circlator#189 · Filter by author isabelluo opened on Jul 19, 2024

• circlator stuck

  sanger-pathogens/circlator#188 · Filter by author jpinus opened on May 21, 2024
  2

• AMOS installation error

  sanger-pathogens/circlator#183 · Filter by author ChongLC opened on Dec 9, 2022

• Should the assembly be a reference genome?

  sanger-pathogens/circlator#181 · Filter by author elcortegano opened on Jun 7, 2022
  1

• Mitochondrial Fixstart - Control Region as Origin

  sanger-pathogens/circlator#180 · Filter by author HowieJM opened on May 23, 2022

• error with circlator

  sanger-pathogens/circlator#179 · Filter by author sekhwal opened on Feb 15, 2022

• Found canu but couldn't get version. (canu 2.2)

  sanger-pathogens/circlator#178 · Filter by author ppflrs opened on Feb 3, 2022
  2

• Assembler canu run gets terminated

  sanger-pathogens/circlator#177 · Filter by author Rmmendoza opened on Nov 24, 2021
  1

• Use Circlator with nanopore reads of ancestral strain

  sanger-pathogens/circlator#176 · Filter by author SamuelGreenrod opened on Jul 24, 2021

• Circlator for polished genome

  sanger-pathogens/circlator#174 · Filter by author rthapa1 opened on Feb 9, 2021
  1

• Circlator seems to run forever

  sanger-pathogens/circlator#173 · Filter by author tnn111 opened on Feb 4, 2021
  2

• what's meaning of the original_assembly.fasta and new_assembly.fasta?

  sanger-pathogens/circlator#172 · Filter by author wanjinhu opened on Jan 21, 2021
  1

• Using spades --isolate option in circlator all

  sanger-pathogens/circlator#171 · Filter by author brettmorg opened on Nov 2, 2020

• circlator test fails at merge step

  sanger-pathogens/circlator#169 · Filter by author davidjstudholme opened on Sep 1, 2020
  3

• no specific circularization record

  sanger-pathogens/circlator#167 · Filter by author zhaoxvwahaha opened on Jun 9, 2020

• Should we do polish（racon+pilon） or circlator first

  sanger-pathogens/circlator#166 · Filter by author zhaoxvwahaha opened on Jun 9, 2020

• Invalid kmer coverage histogram

  sanger-pathogens/circlator#165 · Filter by author s4251484 opened on May 22, 2020
  1

• Paired-end reads

  sanger-pathogens/circlator#164 · Filter by author DarrenObbard opened on May 8, 2020

• fixstart stringency

  sanger-pathogens/circlator#163 · Filter by author rjsorr opened on Apr 25, 2020
  1

• Didn't find canu in path. Looked for:canu

  sanger-pathogens/circlator#162 · Filter by author jellila opened on Mar 25, 2020
  3

• circlator failed to detect Canu 'suggestCircular=yes' contigs

  sanger-pathogens/circlator#161 · Filter by author bitcometz opened on Mar 13, 2020
  2

• If these two matches are the same, then the second longest match is used.

  sanger-pathogens/circlator#160 · Filter by author bitcometz opened on Mar 11, 2020