Implement FHIR Types in Java

.github/distributed-test/docker-compose.yml

@@ -122,7 +122,6 @@ services:
       DB_CASSANDRA_REQUEST_TIMEOUT: "60000"
       DB_CASSANDRA_MAX_CONCURRENT_REQUESTS: "128"
       DB_BLOCK_CACHE_SIZE: "128"
-      DB_RESOURCE_CACHE_SIZE: "100000"
       DB_RESOURCE_INDEXER_THREADS: "8"
       ALLOW_MULTIPLE_DELETE: "true"
       ENABLE_INTERACTION_DELETE_HISTORY: "true"
@@ -156,7 +155,6 @@ services:
       DB_CASSANDRA_REQUEST_TIMEOUT: "60000"
       DB_CASSANDRA_MAX_CONCURRENT_REQUESTS: "128"
       DB_BLOCK_CACHE_SIZE: "128"
-      DB_RESOURCE_CACHE_SIZE: "100000"
       DB_RESOURCE_INDEXER_THREADS: "8"
       ALLOW_MULTIPLE_DELETE: "true"
       ENABLE_INTERACTION_DELETE_HISTORY: "true"

.github/scripts/age-test.sh

@@ -0,0 +1,57 @@
+#!/bin/bash -e
+
+#
+# This script test that the complex data type Age works as expected
+#
+
+script_dir="$(dirname "$(readlink -f "$0")")"
+. "$script_dir/util.sh"
+
+base="http://localhost:8080/fhir"
+
+echo "ℹ️ Age as polymorph data element in Condition"
+
+condition() {
+cat <<END
+{
+  "resourceType": "Condition",
+  "onsetAge": {
+    "value": 42,
+    "unit": "year",
+    "system": "http://unitsofmeasure.org",
+    "code": "a"
+  }
+}
+END
+}
+
+response="$(condition | create "$base/Condition")"
+
+test "age value" "$(echo "$response" | jq -r .onsetAge.value)" "42"
+test "age unit" "$(echo "$response" | jq -r .onsetAge.unit)" "year"
+
+echo "ℹ️ Age as extension value"
+
+patient() {
+cat <<END
+{
+  "resourceType": "Patient",
+  "extension": [
+    {
+      "url": "foo",
+      "valueAge": {
+        "value": 42,
+        "unit": "year",
+        "system": "http://unitsofmeasure.org",
+        "code": "a"
+      }
+    }
+  ]
+}
+END
+}
+
+response="$(patient | create "$base/Patient")"
+
+test "age value" "$(echo "$response" | jq -r .extension[0].valueAge.value)" "42"
+test "age unit" "$(echo "$response" | jq -r .extension[0].valueAge.unit)" "year"

.github/scripts/check-capability-statement.sh

@@ -4,7 +4,10 @@ script_dir="$(dirname "$(readlink -f "$0")")"
 . "$script_dir/util.sh"
 
 base="${1:-http://localhost:8080/fhir}"
-capability_statement=$(curl -sH 'Accept: application/fhir+json' "$base/metadata")
+
+echo "ℹ️ JSON Format"
+
+capability_statement=$(curl -sfH 'Accept: application/fhir+json' "$base/metadata")
 
 test "status" "$(echo "$capability_statement" | jq -r .status)" "active"
 test "kind" "$(echo "$capability_statement" | jq -r .kind)" "instance"
@@ -20,3 +23,13 @@ test "Operation Patient \$everything Definition" "$(echo "$capability_statement"
 test "Operation Patient \$everything Documentation" "$(echo "$capability_statement" | jq -r '.rest[0].resource[] | select(.type == "Patient") .operation[] | select(.name == "everything") | .documentation')" "Returns all resources from the patient compartment of one concrete patient including the patient. Has a fix limit of 10,000 resources if paging isn't used. Paging is supported when the _count parameter is used. No other params are supported."
 
 test "Operation \$totals Documentation" "$(echo "$capability_statement" | jq -r '.rest[0].operation[] | select(.name == "totals") | .documentation')" "Retrieves the total counts of resources available by resource type."
+
+echo "ℹ️ XML Format"
+
+capability_statement=$(curl -sfH 'Accept: application/fhir+xml' "$base/metadata")
+
+test "status" "$(echo "$capability_statement" | xq -x //status/@value)" "active"
+test "kind" "$(echo "$capability_statement" | xq -x //kind/@value)" "instance"
+test "software name" "$(echo "$capability_statement" | xq -x //software/name/@value)" "Blaze"
+test "URL" "$(echo "$capability_statement" | xq -x //implementation/url/@value)" "http://localhost:8080/fhir"
+test "FHIR version" "$(echo "$capability_statement" | xq -x //fhirVersion/@value)" "4.0.1"

.github/scripts/count-test.sh

@@ -0,0 +1,35 @@
+#!/bin/bash -e
+
+#
+# This script test that the complex data type Count works as expected
+#
+
+script_dir="$(dirname "$(readlink -f "$0")")"
+. "$script_dir/util.sh"
+
+base="http://localhost:8080/fhir"
+
+echo "ℹ️ Count as extension value"
+
+patient() {
+cat <<END
+{
+  "resourceType": "Patient",
+  "extension": [
+    {
+      "url": "foo",
+      "valueCount": {
+        "value": 23,
+        "system": "http://unitsofmeasure.org",
+        "code": "1"
+      }
+    }
+  ]
+}
+END
+}
+
+response="$(patient | create "$base/Patient")"
+
+test "count value" "$(echo "$response" | jq -r .extension[0].valueCount.value)" "23"
+test "count code" "$(echo "$response" | jq -r .extension[0].valueCount.code)" "1"

.github/scripts/distance-test.sh

@@ -0,0 +1,36 @@
+#!/bin/bash -e
+
+#
+# This script test that the complex data type Distance works as expected
+#
+
+script_dir="$(dirname "$(readlink -f "$0")")"
+. "$script_dir/util.sh"
+
+base="http://localhost:8080/fhir"
+
+echo "ℹ️ Distance as extension value"
+
+patient() {
+cat <<END
+{
+  "resourceType": "Patient",
+  "extension": [
+    {
+      "url": "foo",
+      "valueDistance": {
+        "value": 23,
+        "unit": "km",
+        "system": "http://unitsofmeasure.org",
+        "code": "km"
+      }
+    }
+  ]
+}
+END
+}
+
+response="$(patient | create "$base/Patient")"
+
+test "distance value" "$(echo "$response" | jq -r .extension[0].valueDistance.value)" "23"
+test "distance unit" "$(echo "$response" | jq -r .extension[0].valueDistance.unit)" "km"

.github/scripts/duration-test.sh

@@ -0,0 +1,57 @@
+#!/bin/bash -e
+
+#
+# This script test that the complex data type Duration works as expected
+#
+
+script_dir="$(dirname "$(readlink -f "$0")")"
+. "$script_dir/util.sh"
+
+base="http://localhost:8080/fhir"
+
+echo "ℹ️ Duration as polymorph data element in ActivityDefinition"
+
+activity_definition() {
+cat <<END
+{
+  "resourceType": "ActivityDefinition",
+  "timingDuration": {
+    "value": 23,
+    "unit": "second",
+    "system": "http://unitsofmeasure.org",
+    "code": "s"
+  }
+}
+END
+}
+
+response="$(activity_definition | create "$base/ActivityDefinition")"
+
+test "duration value" "$(echo "$response" | jq -r .timingDuration.value)" "23"
+test "duration unit" "$(echo "$response" | jq -r .timingDuration.unit)" "second"
+
+echo "ℹ️ Duration as extension value"
+
+patient() {
+cat <<END
+{
+  "resourceType": "Patient",
+  "extension": [
+    {
+      "url": "foo",
+      "valueDuration": {
+        "value": 23,
+        "unit": "second",
+        "system": "http://unitsofmeasure.org",
+        "code": "s"
+      }
+    }
+  ]
+}
+END
+}
+
+response="$(patient | create "$base/Patient")"
+
+test "duration value" "$(echo "$response" | jq -r .extension[0].valueDuration.value)" "23"
+test "duration unit" "$(echo "$response" | jq -r .extension[0].valueDuration.unit)" "second"