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tensorflow, protobuf>3.20, and sleap #6

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P: tensorflow-macos >=2.10.0,<2.13.0, remove conda-forge keras, sleap…
…-train, jsonpickle<=1.5.0
roomrys committed Aug 16, 2024
commit eeec3aa44a99986381bb837c7f84e39e891f8423
1 change: 0 additions & 1 deletion envexp/environment.yml
Original file line number Diff line number Diff line change
@@ -14,7 +14,6 @@ dependencies:
- conda-forge::grpcio <2.0,>=1.24.3
- conda-forge::h5py >=2.9.0
- conda-forge::idna <4,>=2.5
- conda-forge::keras <2.10.0,>=2.9.0rc0 # Required for tensorflow-macos
- conda-forge::keras-preprocessing >=1.1.1
- anaconda::markdown >=2.6.8
- conda-forge::MarkupSafe >=2.1.1
2 changes: 1 addition & 1 deletion envexp/test_env.py
Original file line number Diff line number Diff line change
@@ -138,5 +138,5 @@ def main(library=None, input_dir=None, commit_message=None):
main(
# library="qtpy",
input_dir="/Users/liezlmaree/Projects/sleap/sleap",
commit_message="tensorflow-macos >=2.10.0,<2.13.0, sleap-train, jsonpickle<=1.5.0",
commit_message="tensorflow-macos >=2.10.0,<2.13.0, remove conda-forge keras, sleap-train, jsonpickle<=1.5.0",
)
8 changes: 4 additions & 4 deletions mamba_list.txt
Original file line number Diff line number Diff line change
@@ -2,7 +2,7 @@ List of packages in environment: "/Users/liezlmaree/micromamba/envs/experiment"
Name Version Build Channel
─────────────────────────────────────────────────────────────────────────────────────────────
absl-py 2.1.0 pyhd8ed1ab_0 conda-forge
aiohappyeyeballs 2.3.5 pyhd8ed1ab_0 conda-forge
aiohappyeyeballs 2.3.6 pyhd8ed1ab_0 conda-forge
aiohttp 3.10.3 py310ha6dd24b_0 conda-forge
aiosignal 1.3.1 pyhd8ed1ab_0 conda-forge
albucore 0.0.12 pyhd8ed1ab_0 conda-forge
@@ -85,12 +85,12 @@ List of packages in environment: "/Users/liezlmaree/micromamba/envs/experiment"
jsonschema 4.23.0 pyhd8ed1ab_0 conda-forge
jsonschema-specifications 2023.12.1 pyhd8ed1ab_0 conda-forge
jxrlib 1.1 h93a5062_3 conda-forge
keras 2.9.0 pyhd8ed1ab_0 conda-forge
keras-preprocessing 1.1.2 pyhd8ed1ab_0 conda-forge
kiwisolver 1.4.5 py310h38f39d4_1 conda-forge
krb5 1.21.3 h237132a_0 conda-forge
lame 3.100 h1a8c8d9_1003 conda-forge
lazy_loader 0.4 pyhd8ed1ab_0 conda-forge
lazy-loader 0.4 pyhd8ed1ab_1 conda-forge
lazy_loader 0.4 pyhd8ed1ab_1 conda-forge
lcms2 2.16 ha0e7c42_0 conda-forge
lerc 4.0.0 h9a09cb3_0 conda-forge
libabseil 20240116.2 cxx17_h00cdb27_1 conda-forge
@@ -218,7 +218,7 @@ List of packages in environment: "/Users/liezlmaree/micromamba/envs/experiment"
python-dateutil 2.9.0 pyhd8ed1ab_0 conda-forge
python-rapidjson 1.20 py310hcf9f62a_0 conda-forge
python-tzdata 2024.1 pyhd8ed1ab_0 conda-forge
python_abi 3.10 4_cp310 conda-forge
python_abi 3.10 5_cp310 conda-forge
pytz 2024.1 pyhd8ed1ab_0 conda-forge
pyu2f 0.1.5 pyhd8ed1ab_0 conda-forge
pywavelets 1.7.0 py310hb3e58dc_0 conda-forge
8 changes: 4 additions & 4 deletions pipdeptree.txt
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
aiohttp @ file:///Users/runner/miniforge3/conda-bld/aiohttp_1723330888367/work
aiohappyeyeballs @ file:///home/conda/feedstock_root/build_artifacts/aiohappyeyeballs_1723050862572/work
aiohappyeyeballs @ file:///home/conda/feedstock_root/build_artifacts/aiohappyeyeballs_1723793936996/work
aiosignal @ file:///home/conda/feedstock_root/build_artifacts/aiosignal_1667935791922/work
frozenlist @ file:///Users/runner/miniforge3/conda-bld/frozenlist_1702645565720/work
async-timeout @ file:///home/conda/feedstock_root/build_artifacts/async-timeout_1691763562544/work
@@ -27,7 +27,7 @@ albumentations @ file:///home/conda/feedstock_root/build_artifacts/albumentation
imageio @ file:///home/conda/feedstock_root/build_artifacts/imageio_1719234999090/work
numpy==1.23.5
pillow @ file:///Users/runner/miniforge3/conda-bld/pillow_1719903567335/work
lazy_loader @ file:///home/conda/feedstock_root/build_artifacts/lazy_loader_1712342969017/work
lazy_loader @ file:///home/conda/feedstock_root/build_artifacts/lazy-loader_1723774329602/work
packaging @ file:///home/conda/feedstock_root/build_artifacts/packaging_1718189413536/work
networkx @ file:///home/conda/feedstock_root/build_artifacts/networkx_1712540363324/work
numpy==1.23.5
@@ -54,7 +54,7 @@ cattrs @ file:///home/conda/feedstock_root/build_artifacts/cattrs_1701406356568/
exceptiongroup @ file:///home/conda/feedstock_root/build_artifacts/exceptiongroup_1720869315914/work
typing_extensions @ file:///home/conda/feedstock_root/build_artifacts/typing_extensions_1717802530399/work
click @ file:///home/conda/feedstock_root/build_artifacts/click_1692311806742/work
-e git+https://github.com/roomrys/envexp@7e85d2b4f34ece808d47d2025bf56589451638ef#egg=experiment&subdirectory=envexp
-e git+https://github.com/roomrys/envexp@5078bc280d6d2cd0fc9b8103d6a71601a151d0ce#egg=experiment&subdirectory=envexp
h2 @ file:///home/conda/feedstock_root/build_artifacts/h2_1634280454336/work
hpack==4.0.0
hyperframe @ file:///home/conda/feedstock_root/build_artifacts/hyperframe_1619110129307/work
@@ -219,7 +219,7 @@ segmentation-models==1.0.1
imageio @ file:///home/conda/feedstock_root/build_artifacts/imageio_1719234999090/work
numpy==1.23.5
pillow @ file:///Users/runner/miniforge3/conda-bld/pillow_1719903567335/work
lazy_loader @ file:///home/conda/feedstock_root/build_artifacts/lazy_loader_1712342969017/work
lazy_loader @ file:///home/conda/feedstock_root/build_artifacts/lazy-loader_1723774329602/work
packaging @ file:///home/conda/feedstock_root/build_artifacts/packaging_1718189413536/work
networkx @ file:///home/conda/feedstock_root/build_artifacts/networkx_1712540363324/work
numpy==1.23.5
11 changes: 6 additions & 5 deletions test.log
Original file line number Diff line number Diff line change
@@ -1,7 +1,8 @@
2024-08-15 23:09:39,338 INFO envexp_utils.log Testing imports with:
2024-08-15 23:09:39,338 INFO envexp_utils.log import sleap
2024-08-15 23:09:46,935 INFO envexp_utils.log Imports passed successfully!
2024-08-15 23:09:46,935 INFO envexp_utils.log Running user-defined test code:
2024-08-16 13:36:53,613 INFO envexp_utils.log Environment created successfully!
2024-08-16 13:36:55,313 INFO envexp_utils.log Testing imports with:
2024-08-16 13:36:55,313 INFO envexp_utils.log import sleap
2024-08-16 13:38:40,382 INFO envexp_utils.log Imports passed successfully!
2024-08-16 13:38:40,384 INFO envexp_utils.log Running user-defined test code:
"""User-defined test code to run after the imports have been tested."""

if __name__ == "__main__":
@@ -32,4 +33,4 @@ if __name__ == "__main__":

sleap_train(["/Users/liezlmaree/Projects/sleap-datasets/drosophila-melanogaster-courtship/models/231016_063130.centroid.n=149","./test_labels.slp"])

2024-08-15 23:50:58,998 INFO envexp_utils.log Tests passed successfully!
2024-08-16 14:05:34,386 INFO envexp_utils.log Tests passed successfully!