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  • DeepSeek-V3 Public

    Forked from deepseek-ai/DeepSeek-V3
    Python MIT License Updated Jan 26, 2025

  • pingoogle Public

    Python Updated Nov 14, 2024

  • nf-core-wgcnamodules Public

    Nextflow MIT License Updated May 23, 2024

  • pytest Public

    Forked from pytest-dev/pytest

    The pytest framework makes it easy to write small tests, yet scales to support complex functional testing

    Python MIT License Updated May 22, 2024

  • pandas-docker Public

    Project to build a docker container with python and pandas.

    Updated May 22, 2024

  • wgcnamodules_testdata Public

    Toy data generated to facilitate the use and testing of the pipeline wgcnamodules created for the book chapter-

    Shell Updated May 21, 2024

  • differentialabundance Public

    Forked from nf-core/differentialabundance

    Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq

    Nextflow MIT License Updated May 7, 2024

  • savings_calculator Public

    Python Updated Apr 9, 2024

  • chipseq Public

    Forked from nf-core/chipseq

    ChIP-seq peak-calling, QC and differential analysis pipeline.

    Nextflow MIT License Updated Mar 5, 2024

  • AraPheno Public

    Forked from 1001genomes/AraPheno

    AraPheno source code for http://arapheno.1001genomes.org

    HTML MIT License Updated Feb 29, 2024

  • roldanjg Public

    My personal repository.

    Updated Jan 19, 2024

  • rnaseq Public

    Forked from nf-core/rnaseq

    RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

    Nextflow MIT License Updated Jan 19, 2024

  • macs-analysis-pipelines Public

    Forked from macs3-project/genomics-analysis-pipelines

    Pipeline codes for analyzing various genomics datasets based on MACS3

    Python BSD 3-Clause "New" or "Revised" License Updated Sep 5, 2023

  • PyWGCNA Public

    Forked from mortazavilab/PyWGCNA

    PyWGCNA is a Python package designed to do Weighted correlation network analysis (WGCNA)

    Jupyter Notebook MIT License Updated Nov 10, 2022

  • TrimGalore Public

    Forked from FelixKrueger/TrimGalore

    A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data

    Perl GNU General Public License v3.0 Updated Oct 14, 2022

  • public-apis Public

    Forked from public-apis/public-apis

    A collective list of free APIs

    Python MIT License Updated Jun 25, 2022

  • biofx_python Public

    Forked from kyclark/biofx_python

    Code for Mastering Python for Bioinformatics (O'Reilly, 2021, ISBN 9781098100889)

    Python MIT License Updated Feb 7, 2022

  • gff3_parser Public

    Forked from McClain-Thiel/gff3_parser

    A package for parsing gff3 (general feature format) files into pandas dataframes

    Python MIT License Updated Sep 17, 2021

  • methylationBisulfite Public

    This is a pipeline developed to analyce bisulfite and Dapseq experiments

    Python Updated Jun 11, 2021

  • pyrpipe Public

    Forked from urmi-21/pyrpipe

    Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

    Python MIT License Updated Jun 4, 2021

  • DNAshapeValues Public

    Pipeline to get the values of Roll, MGW, ProT and HelT from a genome.fa file

    Python Creative Commons Zero v1.0 Universal Updated Mar 18, 2021

  • anthocyanins Public

    Analisys performed for the TDThub output when using the Blastp Tool, using anthocianins regulation as example

    Python MIT License Updated Mar 16, 2021

  • tmuxp Public

    Forked from tmux-python/tmuxp

    💻 tmux session manager. built on libtmux

    Python MIT License Updated Mar 3, 2021

  • new.py Public

    Forked from kyclark/new.py

    Python program to write new Python programs

    Python MIT License Updated Dec 10, 2020

  • gem3-mapper Public

    Forked from smarco/gem3-mapper

    GEM-Mapper v3

    C GNU General Public License v3.0 Updated Sep 25, 2020

  • Dap-Seq-pipeline Public

    Forked from ndu-bioinfo/Dap-Seq-pipeline

    TF-DNA-binding assay analysis pipeline

    Jupyter Notebook Updated Aug 25, 2020

  • basicregistation Public

    This is a basic registration method in django

    HTML Updated May 23, 2020

  • Accelerated_Intro_to_CompBio_Part_2 Public archive

    Forked from CBGP-UPM-INIA-PUBLIC/Accelerated_Intro_to_CompBio_Part_2

    Part 2 of the "Accelerated intro to Computational Biology for Biologists" course for the Master's Programme in Computational Biology, Universidad Politecnica de Madrid. This covers the first 2 week…

    Jupyter Notebook Other Updated May 4, 2020

  • my_cookbook_model Public

    Updated Dec 23, 2019

  • Accelerated_Advanced_Python_weeks3_4 Public archive

    Forked from CBGP-UPM-INIA-PUBLIC/Accelerated_Advanced_Python_weeks3_4

    This repository contains jupyter notebooks for weeks 3 and 4 of Accelerated Computational Biology class. This tutorial will cover advanced NumPy lectures including several algorithms used for data …

    Jupyter Notebook Updated Sep 14, 2019