regen-network · paul121 · Dec 27, 2024 · Oct 2, 2024 · Oct 2, 2024 · Oct 3, 2024
diff --git a/schema/Makefile b/schema/Makefile
@@ -1,3 +1,6 @@
+gen-taxonomy:
+	python3 scripts/populateSemanticEnums.py
+
 lint:
 	linkml-lint --validate src/ -a
 
@@ -10,4 +13,4 @@ gen-jsonld:
 validate:
 	linkml-validate -s src/TerrasosProjectInfo.yaml --target-class TerrasosProjectInfo data/TerrasosProjectInfoData.yaml
 
-all: lint gen-doc gen-jsonld validate
+all: gen-taxonomy lint gen-doc gen-jsonld validate
diff --git a/schema/README.md b/schema/README.md
@@ -12,5 +12,9 @@
 - Create separate schema files for each logical schema class and `import` into the root `schemas.yaml` file.
 - Generated markdown from schemas:
     ```shell
-    gen-doc schema/src/schemas.yml --directory schema/generated --diagram-type er_diagram
+    gen-doc schema/src/schemas.yaml --directory schema/generated --diagram-type er_diagram
+    ```
+- Generate linkml enums for taxonomy terms:
+    ```shell
+    python populateSemanticEnums.py
     ```
diff --git a/schema/data/TerrasosProjectInfoData.yaml b/schema/data/TerrasosProjectInfoData.yaml
@@ -28,7 +28,7 @@ biomeType:
 watershed: "Amazon River"
 subWatershed: "Upper Amazon"
 environmentType: 
-  - CLOUD_FOREST
+  - BOG
 projectDuration: "P1Y"
 creditClassVersion: "1.0"
 ecologicalConnectivityIndex: 75.5

diff --git a/schema/generated/ActivityTypes.md b/schema/generated/ActivityTypes.md
@@ -2,19 +2,38 @@
 
 
 
-
-_The type of activity_
-
-
-
 URI: [ActivityTypes](ActivityTypes.md)
 
 ## Permissible Values
 
 | Value | Meaning | Description |
 | --- | --- | --- |
-| CONSERVATION | rfs:Conservation | a conservation activity |
-| ECOSYSTEM_RESTORATION | rfs:EcosystemRestoration | an ecosystem restoration activity |
+| RESIDUE_TILLAGE_MANAGEMENT | rft:ResidueTillageManagement |  |
+| BIOCHAR_PRODUCTION | rft:BiocharProduction |  |
+| IMPROVED_FOREST_MANAGEMENT | rft:ImprovedForestManagement |  |
+| AGROFORESTRY | rft:Agroforestry |  |
+| PRESCRIBED_GRAZING | rft:PrescribedGrazing |  |
+| RIPARIAN_FOREST_BUFFERS | rft:RiparianForestBuffers |  |
+| SOIL_AMENDMENTS | rft:SoilAmendments |  |
+| CONSERVATION | rft:Conservation |  |
+| ECOTOURISM | rft:Ecotourism |  |
+| COVER_CROPPING | rft:CoverCropping |  |
+| TREE_PLANTING | rft:TreePlanting |  |
+| PHOTOCATALYST_APPLICATION | rft:PhotocatalystApplication |  |
+| ECOSYSTEM_RESTORATION | rft:EcosystemRestoration |  |
+| INDUSTRIAL_BIOCHAR_PRODUCTION | rft:IndustrialBiocharProduction |  |
+| ARTISANAL_BIOCHAR_PRODUCTION | rft:ArtisanalBiocharProduction |  |
+| BIOCHAR | rft:Biochar |  |
+| ENHANCED_ROCK_WEATHERING | rft:EnhancedRockWeathering |  |
+| COMPOST_AMENDMENTS | rft:CompostAmendments |  |
+| KEYSTONE_SPECIES_CONSERVATION | rft:KeystoneSpeciesConservation |  |
+| UMBRELLA_SPECIES_CONSERVATION | rft:UmbrellaSpeciesConservation |  |
+| SILVOPASTURE | rft:Silvopasture |  |
+| FOREST_FARMING | rft:ForestFarming |  |
+| NON_URBAN_FOREST_IMPROVEMENT | rft:NonUrbanForestImprovement |  |
+| URBAN_FOREST_IMPROVEMENT | rft:UrbanForestImprovement |  |
+| AFFORESTATION | rft:Afforestation |  |
+| REFORESTATION | rft:Reforestation |  |
 
 
 
@@ -24,6 +43,7 @@ URI: [ActivityTypes](ActivityTypes.md)
 | Name | Description |
 | ---  | --- |
 | [projectActivities](projectActivities.md) | the activity |
+| [activity](activity.md) | The types of activities being implemented in projects |
 | [projectActivity](projectActivity.md) | the activity |
 
 
@@ -54,18 +74,113 @@ URI: [ActivityTypes](ActivityTypes.md)
 <details>
 ```yaml
 name: ActivityTypes
-description: The type of activity
 from_schema: https://framework.regen.network/schema/
 rank: 1000
 permissible_values:
+  RESIDUE_TILLAGE_MANAGEMENT:
+    text: RESIDUE_TILLAGE_MANAGEMENT
+    meaning: rft:ResidueTillageManagement
+    title: ResidueTillageManagement
+  BIOCHAR_PRODUCTION:
+    text: BIOCHAR_PRODUCTION
+    meaning: rft:BiocharProduction
+    title: BiocharProduction
+  IMPROVED_FOREST_MANAGEMENT:
+    text: IMPROVED_FOREST_MANAGEMENT
+    meaning: rft:ImprovedForestManagement
+    title: ImprovedForestManagement
+  AGROFORESTRY:
+    text: AGROFORESTRY
+    meaning: rft:Agroforestry
+    title: Agroforestry
+  PRESCRIBED_GRAZING:
+    text: PRESCRIBED_GRAZING
+    meaning: rft:PrescribedGrazing
+    title: PrescribedGrazing
+  RIPARIAN_FOREST_BUFFERS:
+    text: RIPARIAN_FOREST_BUFFERS
+    meaning: rft:RiparianForestBuffers
+    title: RiparianForestBuffers
+  SOIL_AMENDMENTS:
+    text: SOIL_AMENDMENTS
+    meaning: rft:SoilAmendments
+    title: SoilAmendments
   CONSERVATION:
     text: CONSERVATION
-    description: a conservation activity
-    meaning: rfs:Conservation
+    meaning: rft:Conservation
+    title: Conservation
+  ECOTOURISM:
+    text: ECOTOURISM
+    meaning: rft:Ecotourism
+    title: Ecotourism
+  COVER_CROPPING:
+    text: COVER_CROPPING
+    meaning: rft:CoverCropping
+    title: CoverCropping
+  TREE_PLANTING:
+    text: TREE_PLANTING
+    meaning: rft:TreePlanting
+    title: TreePlanting
+  PHOTOCATALYST_APPLICATION:
+    text: PHOTOCATALYST_APPLICATION
+    meaning: rft:PhotocatalystApplication
+    title: PhotocatalystApplication
   ECOSYSTEM_RESTORATION:
     text: ECOSYSTEM_RESTORATION
-    description: an ecosystem restoration activity
-    meaning: rfs:EcosystemRestoration
+    meaning: rft:EcosystemRestoration
+    title: EcosystemRestoration
+  INDUSTRIAL_BIOCHAR_PRODUCTION:
+    text: INDUSTRIAL_BIOCHAR_PRODUCTION
+    meaning: rft:IndustrialBiocharProduction
+    title: IndustrialBiocharProduction
+  ARTISANAL_BIOCHAR_PRODUCTION:
+    text: ARTISANAL_BIOCHAR_PRODUCTION
+    meaning: rft:ArtisanalBiocharProduction
+    title: ArtisanalBiocharProduction
+  BIOCHAR:
+    text: BIOCHAR
+    meaning: rft:Biochar
+    title: Biochar
+  ENHANCED_ROCK_WEATHERING:
+    text: ENHANCED_ROCK_WEATHERING
+    meaning: rft:EnhancedRockWeathering
+    title: EnhancedRockWeathering
+  COMPOST_AMENDMENTS:
+    text: COMPOST_AMENDMENTS
+    meaning: rft:CompostAmendments
+    title: CompostAmendments
+  KEYSTONE_SPECIES_CONSERVATION:
+    text: KEYSTONE_SPECIES_CONSERVATION
+    meaning: rft:KeystoneSpeciesConservation
+    title: KeystoneSpeciesConservation
+  UMBRELLA_SPECIES_CONSERVATION:
+    text: UMBRELLA_SPECIES_CONSERVATION
+    meaning: rft:UmbrellaSpeciesConservation
+    title: UmbrellaSpeciesConservation
+  SILVOPASTURE:
+    text: SILVOPASTURE
+    meaning: rft:Silvopasture
+    title: Silvopasture
+  FOREST_FARMING:
+    text: FOREST_FARMING
+    meaning: rft:ForestFarming
+    title: ForestFarming
+  NON_URBAN_FOREST_IMPROVEMENT:
+    text: NON_URBAN_FOREST_IMPROVEMENT
+    meaning: rft:NonUrbanForestImprovement
+    title: NonUrbanForestImprovement
+  URBAN_FOREST_IMPROVEMENT:
+    text: URBAN_FOREST_IMPROVEMENT
+    meaning: rft:UrbanForestImprovement
+    title: UrbanForestImprovement
+  AFFORESTATION:
+    text: AFFORESTATION
+    meaning: rft:Afforestation
+    title: Afforestation
+  REFORESTATION:
+    text: REFORESTATION
+    meaning: rft:Reforestation
+    title: Reforestation
 
 ```
 </details>
diff --git a/schema/generated/AdministrativeArea.md b/schema/generated/AdministrativeArea.md
@@ -1,39 +1,46 @@
 
 
-# Slot: administrativeArea
+# Class: AdministrativeArea
 
 
-_The administrative area associated with the project._
 
+URI: [schema:AdministrativeArea](http://schema.org/AdministrativeArea)
 
 
 
+```mermaid
+erDiagram
+AdministrativeArea {
+    string name  
+    string url  
+}
 
-URI: [rfs:administrativeArea](https://framework.regen.network/schema/administrativeArea)
 
 
-
-<!-- no inheritance hierarchy -->
-
+```
 
 
 
+<!-- no inheritance hierarchy -->
 
-## Applicable Classes
 
-| Name | Description | Modifies Slot |
-| --- | --- | --- |
-| [TerrasosProjectInfo](TerrasosProjectInfo.md) |  |  no  |
+## Slots
 
+| Name | Cardinality and Range | Description | Inheritance |
+| ---  | --- | --- | --- |
+| [name](name.md) | 1 <br/> [String](String.md) | Name of the project | direct |
+| [url](url.md) | 0..1 <br/> [String](String.md) |  | direct |
 
 
 
 
 
+## Usages
 
-## Properties
+| used by | used in | type | used |
+| ---  | --- | --- | --- |
+| [TerrasosProjectInfo](TerrasosProjectInfo.md) | [administrativeArea](administrativeArea.md) | range | [AdministrativeArea](AdministrativeArea.md) |
 
-* Range: [AdministrativeArea](AdministrativeArea.md)
 
 
 
@@ -59,24 +66,69 @@ URI: [rfs:administrativeArea](https://framework.regen.network/schema/administrat
 
 | Mapping Type | Mapped Value |
 | ---  | ---  |
-| self | rfs:administrativeArea |
-| native | rfs:administrativeArea |
+| self | schema:AdministrativeArea |
+| native | rfs:AdministrativeArea |
+
+
+
 
 
 
 
 ## LinkML Source
 
+<!-- TODO: investigate https://stackoverflow.com/questions/37606292/how-to-create-tabbed-code-blocks-in-mkdocs-or-sphinx -->
+
+### Direct
+
+<details>
+```yaml
+name: AdministrativeArea
+from_schema: https://framework.regen.network/schema/
+slots:
+- name
+- url
+class_uri: schema:AdministrativeArea
+
+```
+</details>
+
+### Induced
+
 <details>
 ```yaml
-name: administrativeArea
-description: The administrative area associated with the project.
+name: AdministrativeArea
 from_schema: https://framework.regen.network/schema/
-rank: 1000
-alias: administrativeArea
-domain_of:
-- TerrasosProjectInfo
-range: AdministrativeArea
+attributes:
+  name:
+    name: name
+    description: Name of the project.
+    from_schema: https://framework.regen.network/schema/
+    rank: 1000
+    slot_uri: schema:name
+    alias: name
+    owner: AdministrativeArea
+    domain_of:
+    - ProjectInfo
+    - ProjectRole
+    - Organization
+    - File
+    - AdministrativeArea
+    range: string
+    required: true
+  url:
+    name: url
+    from_schema: https://framework.regen.network/schema/
+    rank: 1000
+    slot_uri: schema:URL
+    alias: url
+    owner: AdministrativeArea
+    domain_of:
+    - ProjectRole
+    - Organization
+    - AdministrativeArea
+    range: string
+class_uri: schema:AdministrativeArea
 
 ```
 </details>