v1.0.1

What's Changed

• uses bumps v1.0.4 https://github.com/bumps/bumps/releases/tag/v1.0.4
• fix broken initialization of PolarizedQProbe by @bmaranville in #344
• always send the background and intensity values to plotter by @bmaranville in #347
• apply data_range to all columns, including T, dT, L, dL by @bmaranville in #331
• Add utility for converting simple models to python scripts by @bmaranville in #346
• Install client dependencies by default in build_client.py by @bmaranville in #348
• Threadpool mapper by @pkienzle in #352
• Try to fix DMG create issues with MacOS installer build by @bmaranville in #349
• remove references to pylab by @pkienzle in #359
• update to vite 8 (fast client builds) by @bmaranville in #366

Full Changelog: v1.0.0...v1.0.1

v1.0.1rc0

What's Changed

• use bumps v1.0.4rc0 by @bmaranville in #364
  • Fix MPI session start errors (remove autosave from load_problem) by @bmaranville in bumps/bumps#412
  • Fix inconsistencies between BumpsOptions and command line parser. by @pkienzle in bumps/bumps#417
  • include resource files for wx gui by @bmaranville in bumps/bumps#410
  • Use formatting from uncertainties package by @bmaranville in bumps/bumps#389
  • Add checkpoint interval support to cli options by @pkienzle in bumps/bumps#416
  • use numpy loadtxt to load dream state from MC (text) files by @bmaranville in bumps/bumps#415

Full Changelog: v1.0.1b0...v1.0.1rc0

v1.0.1b0

What's Changed

• Install client dependencies by default in build_client.py by @bmaranville in #348
• Threadpool mapper by @pkienzle in #352
• Try to fix DMG create issues with MacOS installer build by @bmaranville in #349
• remove references to pylab by @pkienzle in #359
• upgrade to bumps 1.0.4b0 by @bmaranville in #361

Full Changelog: v1.0.1a1...v1.0.1b0

v1.0.1a1

What's Changed

• Add utility for converting simple models to python scripts by @bmaranville in #346

Full Changelog: v1.0.1a0...v1.0.1a1

v1.0.1a0

What's Changed

• fix broken initialization of PolarizedQProbe by @bmaranville in #344
• always send the background and intensity values to plotter by @bmaranville in #347
  • (fixes issue where reflectivity doesn't plot for new ModelBuilder models)
• apply data_range to all columns, including T, dT, L, dL by @bmaranville in #331

Full Changelog: v1.0.0...v1.0.1a0

v1.0.0

Refl1d v0.8.16 to v1.0.0 - Major Changes Summary

Architecture & Code Modernization

• Dataclass Refactor: Complete restructuring of class definitions using Python dataclasses for serialization
• Project Restructuring: Major reorganization of the codebase layout and directory structure
• Code Quality: Added ruff linting, pre-commit hooks, and comprehensive code formatting across the entire project
• Bumps 1.x Compatibility: Updated to be compatible with the latest major release of the bumps fitting library

Web Interface & Visualization

• Webview GUI: New web-based user interface, replacing the traditional (WXPython) desktop app, supporting
  • remote server on HPC with local client in browser
  • local server with browser client, like traditional desktop app
  • multiple simultaneous clients to same server
  • multiple simultaneous servers on same machine
• Plotly Plotting: Re-implemented core plots in plotly.js for web-based interactivity
• Custom Plots: Added ability to create and display custom plots in models
• Interactive Profile Uncertainty: The align.py script is replaced with an interactive panel in the webview
• Model Builder: Added a simple visual model builder interface for constructing reflectometry models

Fitting & Analysis Improvements

• Enhanced Magnetic Support:
  • Free magnetism interface enhancements
  • Fixed magnetic amplitude calculations and parameter handling
• Oversampling Enhancements: Improved Q-space oversampling for polarized neutron probes with configurable regions

Data Handling & Compatibility

• ORSO File Support: Now able to load ORSO (Open Reflectometry Standards Organisation) data files
• Serialization Improvements: Better handling of dataclass and functional profile serialization
• Duplicate Q Values: Now supports datasets with duplicate Q values

Installation & Distribution

• Binary Installers: New automated binary installer generation for easier deployment, including signed binaries for MacOS
• Version Management: Switch to versioningit for automatic version numbering from git tags
• Python 3.13 Support: Added compatibility with the latest Python version
• Pure Python Package: Transitioned to a pure Python package using numba for performance, removing the need for C-extensions

CLI & Jupyter Integration

• Webview CLI Options: Unified command-line interface for interactive and batch-mode operations
• Jupyter Integration: Direct method for starting refl1d webview server from Jupyter notebooks

What's Changed (all pull requests)

• Dataclass material refactor by @bmaranville in #160
• Webview: separate API methods from server logic by @bmaranville in #162
• [In development] Add simple builder by @mdoucet in #164
• Remove ordering code and add tab and enter updates by @mdoucet in #165
• Serialize stdlib dataclasses by @bmaranville in #166
• Fix calc_Q for shared theta_offset by @bmaranville in #175
• use separate rho_M_para and rho_M_perp profiles during contract_mag by @bmaranville in #173
• Webview by @pkienzle in #181
• Add ruff, pre-commit, and format existing files by @mdoucet in #184
• Some cleanup by @glass-ships in #183
• Get version number from tag using versioningit by @backmari in #188
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in #191
• update Zenodo badge to generic version by @bmaranville in #192
• Docs build by @bmaranville in #194
• remove approximation shortcut for magnetic_amplitude by @bmaranville in #196
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in #195
• Custom plots rebase by @bmaranville in #199
• Monthly pre commit update by @bmaranville in #200
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in #202
• removing obsolete and non-working actions by @bmaranville in #204
• Update release actions by @bmaranville in #203
• switch to using defaults for versioningit by @bmaranville in #209
• fix repr of LayerLimit and MagneticLayerLimit in flayer.py by @bmaranville in #207
• remove getstate and setstate from Stack, and base argument from init by @bmaranville in #201
• Windows shell launcher by @bmaranville in #208
• add flags for enabling optional persistent path from shortcuts by @bmaranville in #211
• Make LICENSE.txt consistent with documentation by @bmaranville in #213
• re-enable oversampling on PolarizedQProbe by @bmaranville in #214
• Profile uncertainty export with best by @bmaranville in #215
• Model setstate shim by @bmaranville in #216
• calculate the profile uncertainty in a thread by @bmaranville in #222
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in #217
• Formatting changes, update imports, other minor changes by @glass-ships in #227
• Add frontend linting by @glass-ships in #228
• allow background parameter of Probe to be negative by @bmaranville in #218
• Update model.ts by @glass-ships in #230
• Build against current bumps source (after bumps PR #188) by @bmaranville in #233
• show y axis of reflectivity plots in scientific notation (10 to a power) by @bmaranville in #234
• update bumps to 1.0.0a9 by @glass-ships in #235
• Restructure and Reorganize project by @glass-ships in #185
• Remove client cdn by @bmaranville in #210
• fasta is part of periodictable and isn't needed in refl1d by @pkienzle in #238
• Define global in vite.config.js by @glass-ships in #239
• MAINT: remove unused variable by @andyfaff in #240
• Add Refl1D migration between schemas by @bmaranville in #241
• Add note about setting up pre-commit by @glass-ships in #243
• Pytest plain asserts by @bmaranville in #244
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in #236
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in #246
• Fix and test loading ORSO files by @jmborr in #251
• Test types by @glass-ships in #231
• Adjust imports in the wx gui to the new directory layout by @pkienzle in #255
• Fix webview reflectivity ylabels by @bmaranville in #254
• Merge FreeMagnetismInterface feature enhancement by @acaruana2009 in #232
• use uv to set up test environment by @bmaranville in #259
• Aguide convention fix by @bmaranville in #253
• Use new Generic bumps FitProblem by @bmaranville in #258
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in #256
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in #263
• Migrate builder fitproblem by @bmaranville in #264
• Binary installers by @bmaranville in #265
• Use git hash rather than branch name in the jupyter notebook header by @pkienzle in #260
• Automatically hide uncertainty and custom plot tabs when they are not available by @bmaranville in #267
• Webview cli fit options by @pkienzle in #266
• support plotting ProbeSet data + theory in webview by @bmaranville in #268
• automatically create ProbeSet object from multiple probes by @bmaranville in #269
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in https://github.com/reflectom...

v1.0.0rc1

What's Changed

• Fix error shown at startup of client when no reflectivity data to plot by @bmaranville in #325
• Refactor build_client script by @glass-ships in #330

Full Changelog: v1.0.0rc0...v1.0.0rc1

v1.0.0rc0

What's Changed

• Add cloudpickle test to test_stack by @pkienzle in #312
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in #323
• toggle background in data vs theory curve by @hoogerheide in #309
• Add oversampled_regions to PolarizedNeutronProbe and PolarizedQProbe by @bmaranville in #310

Full Changelog: v1.0.0b2...v1.0.0rc0

v1.0.0b2

What's Changed

• Convert data=(R,dR) to R=R, dR=dR for Probe by @pkienzle in #314
• Bump actions/checkout from 4 to 5 by @dependabot[bot] in #319
• Bump actions/download-artifact from 4 to 5 by @dependabot[bot] in #316
• Fix profile uncertainty plots not updating by @bmaranville in #320
• Check parameter name before updating in magnetism by @pkienzle in #313
• Enable batch align and contour export by @pkienzle in #317
• Fix control names in Profile Uncertainty panel by @bmaranville in #321
• Allow vector parameters for functional layers by @pkienzle in #311

From Bumps update to v1.0.3b0:

• Convergence show burn and control cutoff with slider
• Use msgpack for websocket comms with webview client

Full Changelog: v1.0.0b1...v1.0.0b2

v1.0.0b1

What's Changed

• Fix bug in QProbe oversampling logic
• Require bumps==1.0.2 to get fixes to session loading (avoid overwriting fit_state on history reload)
• Fix running client in dev mode by @bmaranville in #307
• use public api accessor probe.calc_Q instead of private _calc_Q by @bmaranville in #305

Full Changelog: v1.0.0b0...v1.0.0b1