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1. multiomics-tcga multiomics-tcga Public

   A machine learning project to distinguish ductal and lobular breast cancer subtypes using TCGA multi-omics data, with SHAP-based interpretation, UMAP visualization, and gene enrichment.

   Python

2. genomics-metadata-portal genomics-metadata-portal Public

   Bioinformatics metadata, provenance, QC, and variant analysis portal with Streamlit UI

   Python

3. dna_variant_calling dna_variant_calling Public

   A reproducible DNA variant calling pipeline using Snakemake to analyze and compare E. coli strains.

   Python

4. rna_seq_pipeline rna_seq_pipeline Public

   A complete RNA-seq analysis pipeline for human samples treated with TGFB1, including quality control, alignment, quantification, differential expression analysis using DESeq2, enrichment analysis, …

   Python