[pre-commit.ci] pre-commit autoupdate

.pre-commit-config.yaml

@@ -1,6 +1,6 @@
 repos:
 -   repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.4.0
+    rev: v4.5.0
     hooks:
     -   id: check-added-large-files
         args: ['--maxkb=100']
@@ -24,28 +24,19 @@ repos:
     -   id: python-no-log-warn
     -   id: python-use-type-annotations
     -   id: text-unicode-replacement-char
--   repo: https://github.com/asottile/reorder-python-imports
-    rev: v3.12.0
-    hooks:
-    -   id: reorder-python-imports
-        args: [--py38-plus, --add-import, 'from __future__ import annotations']
 -   repo: https://github.com/asottile/setup-cfg-fmt
     rev: v2.5.0
     hooks:
     -   id: setup-cfg-fmt
--   repo: https://github.com/psf/black
-    rev: 23.9.1
-    hooks:
-    -   id: black
 -   repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.0.292
+    rev: v0.3.4
     hooks:
       - id: ruff
+      - id: ruff-format
 -   repo: https://github.com/dosisod/refurb
-    rev: v1.21.0
+    rev: v2.0.0
     hooks:
     -   id: refurb
-        args: [--ignore, FURB126]
 -   repo: https://github.com/executablebooks/mdformat
     rev: 0.7.17
     hooks:
@@ -55,13 +46,8 @@ repos:
             mdformat-black,
         ]
         args: [--wrap, "88"]
--   repo: https://github.com/econchick/interrogate
-    rev: 1.5.0
-    hooks:
-    -   id: interrogate
-        args: [-v, --fail-under=40, src]
 -   repo: https://github.com/pre-commit/mirrors-mypy
-    rev: 'v1.5.1'
+    rev: 'v1.9.0'
     hooks:
     -   id: mypy
         additional_dependencies: [
@@ -81,7 +67,7 @@ repos:
     hooks:
     -   id: check-manifest
         args: [--no-build-isolation]
-        additional_dependencies: [setuptools-scm, toml]
+        additional_dependencies: [setuptools-scm, toml, wheel]
 -   repo: meta
     hooks:
     -   id: check-hooks-apply

README.md

@@ -213,8 +213,7 @@ Use the `serializer` keyword arguments of the `@pytask.mark.julia` decorator wit
 
 ```python
 @pytask.mark.julia(script="script.jl", serializer="yaml")
-def task_example():
-    ...
+def task_example(): ...
 ```
 
 And in your Julia script use
@@ -236,8 +235,7 @@ import json
 
 
 @pytask.mark.julia(script="script.jl", serializer=json.dumps, suffix=".json")
-def task_example():
-    ...
+def task_example(): ...
 ```
 
 ### Configuration

pyproject.toml

@@ -2,11 +2,9 @@
 requires = ["setuptools>=45", "wheel", "setuptools_scm[toml]>=6.0"]
 build-backend = "setuptools.build_meta"
 
-
 [tool.setuptools_scm]
 write_to = "src/pytask_julia/_version.py"
 
-
 [tool.mypy]
 files = ["src", "tests"]
 check_untyped_defs = true
@@ -17,50 +15,31 @@ no_implicit_optional = true
 warn_redundant_casts = true
 warn_unused_ignores = true
 
-
 [[tool.mypy.overrides]]
 module = "tests.*"
 disallow_untyped_defs = false
 ignore_errors = true
 
-
 [tool.ruff]
 target-version = "py38"
-select = ["ALL"]
 fix = true
+unsafe-fixes = true
+
+[tool.ruff.lint]
 extend-ignore = [
-    "I",  # ignore isort
-    "TRY",  # ignore tryceratops
-    # Numpy docstyle
-    "D107",
-    "D203",
-    "D212",
-    "D213",
-    "D402",
-    "D413",
-    "D415",
-    "D416",
-    "D417",
-    # Others.
-    "D404",  # Do not start module docstring with "This".
-    "RET504",  # unnecessary variable assignment before return.
-    "S101",  # raise errors for asserts.
-    "B905",  # strict parameter for zip that was implemented in py310.
-    "ANN101",  # type annotating self
-    "ANN102",  # type annotating cls
-    "FBT",  # flake8-boolean-trap
-    "EM",  # flake8-errmsg
     "ANN401",  # flake8-annotate typing.Any
-    "PD",  # pandas-vet
-    "COM812",  # trailing comma missing, but black takes care of that
+    "COM812",  # Comply with ruff-format.
+    "ISC001",  # Comply with ruff-format.
 ]
+select = ["ALL"]
 
+[tool.ruff.lint.per-file-ignores]
+"tests/*" = ["D", "ANN", "S101"]
 
-[tool.ruff.per-file-ignores]
-"tests/*" = ["D", "ANN", "PLR2004", "PLR0913"]
-
+[tool.ruff.lint.isort]
+force-single-line = true
 
-[tool.ruff.pydocstyle]
+[tool.ruff.lint.pydocstyle]
 convention = "numpy"
 
 [tool.pytest.ini_options]

setup.cfg

@@ -25,7 +25,7 @@ project_urls =
 packages = find:
 install_requires =
     pluggy>=1.0.0
-    pytask>=0.4.0
+    pytask>=0.4.5
 python_requires = >=3.8
 include_package_data = True
 package_dir = =src

src/pytask_julia/__init__.py

@@ -1,4 +1,5 @@
-"""This module contains the main namespace."""
+"""Contains the main namespace."""
+
 from __future__ import annotations
 
 try:

src/pytask_julia/collect.py

@@ -1,4 +1,5 @@
 """Collect tasks."""
+
 from __future__ import annotations
 
 import subprocess
@@ -7,26 +8,26 @@
 from typing import Any
 from typing import Callable
 
-from pytask import has_mark
-from pytask import hookimpl
-from pytask import is_task_function
 from pytask import Mark
 from pytask import NodeInfo
-from pytask import parse_dependencies_from_task_function
-from pytask import parse_products_from_task_function
 from pytask import PathNode
 from pytask import PTask
 from pytask import PythonNode
-from pytask import remove_marks
 from pytask import Session
 from pytask import Task
 from pytask import TaskWithoutPath
-from pytask_julia.serialization import create_path_to_serialized
+from pytask import has_mark
+from pytask import hookimpl
+from pytask import is_task_function
+from pytask import parse_dependencies_from_task_function
+from pytask import parse_products_from_task_function
+from pytask import remove_marks
+
 from pytask_julia.serialization import SERIALIZERS
+from pytask_julia.serialization import create_path_to_serialized
 from pytask_julia.shared import julia
 from pytask_julia.shared import parse_relative_path
 
-
 _SEPARATOR: str = "--"
 """str: Separates options for the Julia executable and arguments to the file."""
 
@@ -62,9 +63,12 @@ def pytask_collect_task(
         # Parse the @pytask.mark.julia decorator.
         obj, marks = remove_marks(obj, "julia")
         if len(marks) > 1:
-            raise ValueError(
+            msg = (
                 f"Task {name!r} has multiple @pytask.mark.julia marks, but only one is "
-                "allowed.",
+                "allowed."
+            )
+            raise ValueError(
+                msg,
             )
 
         mark = _parse_julia_mark(
@@ -98,10 +102,11 @@ def pytask_collect_task(
         )
 
         if not (isinstance(script_node, PathNode) and script_node.path.suffix == ".jl"):
-            raise ValueError(
+            msg = (
                 "The 'script' keyword of the @pytask.mark.julia decorator must point "
                 f"to Julia file with the .jl suffix, but it is {script_node}."
             )
+            raise ValueError(msg)
 
         options_node = session.hook.pytask_collect_node(
             session=session,
@@ -211,8 +216,7 @@ def _parse_julia_mark(
     else:
         parsed_kwargs["project"] = default_project
 
-    mark = Mark("julia", (), parsed_kwargs)
-    return mark
+    return Mark("julia", (), parsed_kwargs)
 
 
 def _parse_project(project: str | Path | None, root: Path) -> list[str]:

src/pytask_julia/config.py

@@ -1,9 +1,11 @@
 """Configure pytask."""
+
 from __future__ import annotations
 
 from typing import Any
 
 from pytask import hookimpl
+
 from pytask_julia.serialization import SERIALIZERS
 from pytask_julia.shared import parse_relative_path
 
@@ -14,9 +16,12 @@ def pytask_parse_config(config: dict[str, Any]) -> None:
     config["markers"]["julia"] = "Tasks which are executed with Julia."
     config["julia_serializer"] = config.get("julia_serializer", "json")
     if config["julia_serializer"] not in SERIALIZERS:
-        raise ValueError(
+        msg = (
             f"'julia_serializer' is {config['julia_serializer']} and not one of "
-            f"{list(SERIALIZERS)}.",
+            f"{list(SERIALIZERS)}."
+        )
+        raise ValueError(
+            msg,
         )
     config["julia_suffix"] = config.get("julia_suffix", "")
     config["julia_options"] = _parse_value_or_whitespace_option(
@@ -35,4 +40,5 @@ def _parse_value_or_whitespace_option(value: Any) -> None | list[str]:
         return None
     if isinstance(value, list):
         return list(map(str, value))
-    raise ValueError(f"'julia_options' is {value} and not a list.")
+    msg = f"'julia_options' is {value} and not a list."
+    raise ValueError(msg)

src/pytask_julia/execute.py

@@ -1,41 +1,45 @@
 """Execute tasks."""
+
 from __future__ import annotations
 
 import shutil
+from typing import TYPE_CHECKING
 from typing import Any
 
-from pytask import get_marks
-from pytask import hookimpl
 from pytask import PPathNode
 from pytask import PTask
-from pytask import PythonNode
+from pytask import get_marks
+from pytask import hookimpl
 from pytask.tree_util import tree_map
+
 from pytask_julia.serialization import serialize_keyword_arguments
 from pytask_julia.shared import julia
 
+if TYPE_CHECKING:
+    from pathlib import Path
+
 
 @hookimpl
 def pytask_execute_task_setup(task: PTask) -> None:
     """Check whether environment allows executing Julia files."""
     marks = get_marks(task, "julia")
     if marks:
         if shutil.which("julia") is None:
-            raise RuntimeError(
+            msg = (
                 "julia is needed to run Julia scripts, but it is not found on your "
-                "PATH.",
+                "PATH."
+            )
+            raise RuntimeError(
+                msg,
             )
 
-        assert len(marks) == 1
-
-        _, _, serializer, suffix, _ = julia(**marks[0].kwargs)
-
-        assert serializer
-        assert suffix is not None
+        _, _, serializer, _, _ = julia(**marks[0].kwargs)
 
-        serialized_node: PythonNode = task.depends_on["_serialized"]  # type: ignore[assignment]
-        serialized_node.value.parent.mkdir(parents=True, exist_ok=True)
+        serialized_node = task.depends_on["_serialized"]
+        path: Path = serialized_node.value  # type: ignore[attr-defined]
+        path.parent.mkdir(parents=True, exist_ok=True)
         kwargs = collect_keyword_arguments(task)
-        serialize_keyword_arguments(serializer, serialized_node.value, kwargs)
+        serialize_keyword_arguments(serializer, path, kwargs)
 
 
 def collect_keyword_arguments(task: PTask) -> dict[str, Any]:

src/pytask_julia/plugin.py

@@ -1,9 +1,11 @@
 """Register hook specifications and implementations."""
+
 from __future__ import annotations
 
 from typing import TYPE_CHECKING
 
 from pytask import hookimpl
+
 from pytask_julia import collect
 from pytask_julia import config
 from pytask_julia import execute