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Update cython directives, turning profiling off by default CI #545: Commit 54f3d41 pushed by jmarshall
7m 39s master
master
7m 39s
Add documentation for all VariantHeader related classes CI #544: Pull request #1394 opened by TimD1
18m 9s TimD1:td_add-variant-header-docs
TimD1:td_add-variant-header-docs
18m 9s
Added VariantContig and VariantMetadata documentation. CI #543: Pull request #1361 synchronize by TimD1
23m 1s TimD1:td_add-variant-metadata-docs
TimD1:td_add-variant-metadata-docs
23m 1s
Add documentation for all VariantRecord related classes CI #542: Pull request #1359 synchronize by TimD1
14m 13s TimD1:td_add-variant-record-docs
TimD1:td_add-variant-record-docs
14m 13s
Add VariantRecordSample documentation CI #541: Pull request #1358 synchronize by TimD1
8m 32s TimD1:td_407_add-variant-record-sample-docs
TimD1:td_407_add-variant-record-sample-docs
8m 32s
Extract shared PileupColumn validity check CI #539: Pull request #1392 synchronize by nh13
1h 16m 32s nh13:nh13/consolidate-pileup-iteration
nh13:nh13/consolidate-pileup-iteration
1h 16m 32s
Consolidate aux tag value decoding in get_tag and get_tags CI #538: Pull request #1391 synchronize by nh13
1h 14m 48s nh13:nh13/consolidate-aux-tag-decoding
nh13:nh13/consolidate-aux-tag-decoding
1h 14m 48s
Extract shared helpers for reference_name and next_reference_name CI #537: Pull request #1390 synchronize by nh13
53m 18s nh13:nh13/consolidate-reference-name
nh13:nh13/consolidate-reference-name
53m 18s
Use bam_set_qname in query_name setter CI #536: Pull request #1389 synchronize by nh13
1h 13m 29s nh13:nh13/use-bam-set-qname
nh13:nh13/use-bam-set-qname
1h 13m 29s
Use bam_cigar2qlen for query length calculation CI #535: Pull request #1388 synchronize by nh13
1h 14m 20s nh13:nh13/use-bam-cigar2qlen
nh13:nh13/use-bam-cigar2qlen
1h 14m 20s
Accumulate insertion count during CIGAR loop in build_alignment_sequence CI #534: Pull request #1387 synchronize by nh13
1h 5m 44s nh13:nh13/build-alignment-seq-insertion-count
nh13:nh13/build-alignment-seq-insertion-count
1h 5m 44s
Cache complement translation table in get_forward_sequence CI #533: Pull request #1386 synchronize by nh13
1h 8m 29s nh13:nh13/cache-complement-table
nh13:nh13/cache-complement-table
1h 8m 29s
Remove redundant copy in getSequenceInRange CI #532: Pull request #1385 synchronize by nh13
58m 55s nh13:nh13/fix-sequence-range-copy
nh13:nh13/fix-sequence-range-copy
58m 55s
Disable Cython profiling hooks in production builds CI #531: Pull request #1384 synchronize by nh13
1h 4m 20s nh13:nh13/disable-cython-profile
nh13:nh13/disable-cython-profile
1h 4m 20s
Remove unused variables in AlignedSegment compare method CI #530: Pull request #1383 synchronize by nh13
45m 21s nh13:nh13/remove-unused-compare-vars
nh13:nh13/remove-unused-compare-vars
45m 21s
Simplify update_bin by collapsing duplicate branches CI #529: Pull request #1382 synchronize by nh13
1h 6m 22s nh13:nh13/simplify-update-bin
nh13:nh13/simplify-update-bin
1h 6m 22s
Fix TypeError in modified_bases_forward when query_sequence is None CI #528: Pull request #1381 synchronize by nh13
30m 31s nh13:nh13/fix-modified-bases-forward-typeerror
nh13:nh13/fix-modified-bases-forward-typeerror
30m 31s
Add missing NULL guard in PileupColumn.get_query_qualities CI #527: Pull request #1380 synchronize by nh13
12m 36s nh13:nh13/fix-pileup-qualities-null-guard
nh13:nh13/fix-pileup-qualities-null-guard
12m 36s
Consolidate aux tag value decoding in get_tag and get_tags CI #526: Pull request #1391 synchronize by nh13
35m 53s nh13:nh13/consolidate-aux-tag-decoding
nh13:nh13/consolidate-aux-tag-decoding
35m 53s
Extract shared PileupColumn validity check CI #525: Pull request #1392 synchronize by nh13
44m 10s nh13:nh13/consolidate-pileup-iteration
nh13:nh13/consolidate-pileup-iteration
44m 10s
Consolidate aux tag value decoding in get_tag and get_tags CI #524: Pull request #1391 synchronize by nh13
10m 18s nh13:nh13/consolidate-aux-tag-decoding
nh13:nh13/consolidate-aux-tag-decoding
10m 18s
Extract shared helpers for reference_name and next_reference_name CI #523: Pull request #1390 synchronize by nh13
45m 40s nh13:nh13/consolidate-reference-name
nh13:nh13/consolidate-reference-name
45m 40s
Extract shared PileupColumn validity check CI #522: Pull request #1392 opened by nh13
6m 2s nh13:nh13/consolidate-pileup-iteration
nh13:nh13/consolidate-pileup-iteration
6m 2s
Consolidate aux tag value decoding in get_tag and get_tags CI #521: Pull request #1391 opened by nh13
4m 46s nh13:nh13/consolidate-aux-tag-decoding
nh13:nh13/consolidate-aux-tag-decoding
4m 46s
Extract shared helpers for reference_name and next_reference_name CI #520: Pull request #1390 opened by nh13
5m 4s nh13:nh13/consolidate-reference-name
nh13:nh13/consolidate-reference-name
5m 4s