Search results

nf-core/sopa maintenance

Status: Open.

Task

#436 In prism-oncology/sopa;

· quentinblampey opened on Jul 15, 2026

Stiching of Patches

Status: Open.

#434 In prism-oncology/sopa;

· YashdeepMul opened on Jul 12, 2026

Support segger as a segmentation method

Status: Open.

Feature

#431 In prism-oncology/sopa;

· EliHei2 opened on Jun 24, 2026

[Bug] Baysor segmentation fails: missing config.toml

Status: Open.

Bug

#427 In prism-oncology/sopa;

· ajitashree opened on Jun 2, 2026

[Bug] Issue when saving as Xenium

Status: Open.

#420 In prism-oncology/sopa;

· lguerard opened on May 13, 2026

Custom Segmentation Error

Status: Open.

#407 In prism-oncology/sopa;

· hallumg opened on Apr 2, 2026

[Bug] sopa.segmentation.cellpose falls back to CPU despite gpu=True and valid torch.cuda context

Status: Open.

Bug

#382 In prism-oncology/sopa;

· rushilp7 opened on Feb 1, 2026

[Bug] Xenium explorer conversion for large PhenoCycler image

Status: Open.

Bug

#378 In prism-oncology/sopa;

· Rayan21100 opened on Jan 13, 2026

segmentation combine between two spatialdata objects

Status: Open.

#369 In prism-oncology/sopa;

· PietroD opened on Dec 16, 2025

[Feature] Add numpy array mask from external tool to sopa's spatialdata

Status: Open.

#361 In prism-oncology/sopa;

· PietroD opened on Dec 2, 2025

Issue CosMx reader and polygons

Status: Open.

#357 In prism-oncology/sopa;

· ccruizm opened on Nov 21, 2025

[Feature] Singular g4x support

Status: Open.

#339 In prism-oncology/sopa;

· derrik-gratz opened on Oct 20, 2025