cell type annotation

[elfthrith]

Dear Joseph and colleagues,
Thank you for your valuable work.
I noticed that the metadata cell grouping information you provided to HCA has 29 clusters, and predicted.celltype.l2 has 31 clusters, which is inconsistent with the 14 clusters in the original text. Looking at the code you provided to learn more about the cohort information still confuses me. I don't know if you are convenient to provide metadata information for the 14 subpopulation subgroups.
Best wishes and thanks!

[MiqG]

@elfthrith Did you find any other way to access cluster labels? Thanks!

I have also asked people in the eQTL Catalogue to upload their preprocessed counts (eQTL-Catalogue/eQTL-Catalogue-resources#47)

Best,

Miquel

[anglixue]

Hi both, @elfthrith @MiqG
It's a bit delayed but let me know if you are still interested in getting access to the Seurat object of the published version.
Drop me an email at a.xue[AT]garvan.org.au, and I will share the access link with you.