Phylogenetic

Introduction

The folder is created by Jerry. Jerry will upload some common programs for building phylogenetic trees and ancestral sequence reconstructions.

Phylogenetic

051823 update: RaxML

031324 update: [FastTree] (http://www.microbesonline.org/fasttree/). Installed in /nfs/polizzi/shared/programs/phylogenetic/FastTree. Run it by /nfs/polizzi/shared/programs/phylogenetic/FastTree {protein_alignment}.fasta > {protein_alignment}.tre

Ancestral Sequence Reconstruction

candidate programs:

1. Lazarus

• Syk-family kinase

Additional useful info

FireProt