Merge pull request #5 from phac-nml/fix/lint

Fixing Lint Problems
phac-nml · Mar 7, 2025 · 1c9fcd4 · 1c9fcd4
2 parents bcd7a00 + 99c29b7
commit 1c9fcd4
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Showing 4 changed files with 4 additions and 76 deletions.
diff --git a/.nf-core.yml b/.nf-core.yml
@@ -12,6 +12,8 @@ lint:
     - lib/WorkflowMain.groovy
     - lib/NfcoreTemplate.groovy
     - lib/WorkflowMetadatatransformation.groovy
+    - conf/igenomes_ignored.config
+    - ro-crate-metadata.json
   files_unchanged:
     - assets/sendmail_template.txt
     - assets/email_template.html
@@ -34,6 +36,7 @@ lint:
     - params.max_cpus
     - params.max_memory
     - params.max_time
+    - nf-schema
   readme:
     - nextflow_badge
 

diff --git a/modules/local/samplesheet_check.nf b/modules/local/samplesheet_check.nf
diff --git a/nextflow_schema.json b/nextflow_schema.json
@@ -2,7 +2,7 @@
     "$schema": "https://json-schema.org/draft-07/schema",
     "$id": "https://raw.githubusercontent.com/phac-nml/metadatatransformation/main/nextflow_schema.json",
     "title": "phac-nml/metadatatransformation pipeline parameters",
-    "description": "IRIDA Next Example Pipeline",
+    "description": "Metadata Transformation Pipeline",
     "type": "object",
     "definitions": {
         "input_output_options": {

diff --git a/subworkflows/local/input_check.nf b/subworkflows/local/input_check.nf