Batch sample import activities

[JeffreyThiessen]

What does this PR do and why?

Describe in detail what your merge request does and why.

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How to set up and validate locally

Numbered steps to set up and validate the change are strongly suggested.

1. seed your db
2. Start irida next with command line enabled
3. Sign into User3
4. navigate to http://localhost:3000/borrelia/borrelia-burgdorferi/outbreak-2024/-/samples
5. in the file test/fixtures/files/batch_sample_import_with_metadata_valid.csv, edit the project_puid values to match the project we are importing to.
6. run the following in the terminal to import new samples.

u = User.all[3];n = Project.all[0].namespace;

# replace this path with the path to your irida next git directory
filepath = '/home/CSCScience.ca/jthiessen/git/irida-next-core/test/fixtures/files/batch_sample_import_with_metadata_valid.csv'

blob = ActiveStorage::Blob.create_and_upload!(io: File.open(filepath), filename: 'batch_sample_import_with_metadata_valid.csv')

s = Samples::BatchFileImportService.new(n,u, blob.id, {sample_name_column: 'sample_name', project_puid_column: 'project_puid', sample_description_column: "description"} )

s.execute

7. You should see 2 new samples added to the project you are viewing. Verify that activities were made for this project.

Then repeat the above but with a group for the namespace, and verify that activities were made for both the project and the group samples were added to.

PR acceptance checklist

This checklist encourages us to confirm any changes have been analyzed to reduce risks in quality, performance, reliability, security, and maintainability.

• I have evaluated the PR acceptance checklist for this PR.

[deepsidhu85]

This looks good. Just one comment about changing the key name which will require you to update wherever the key is used.

[deepsidhu85]

A few more changes but looking good

[github-actions]

Code Metrics Report

Coverage	Test Execution Time
94.6%	10m47s

Code coverage of files in pull request scope (98.1%)

Files	Coverage
app/components/activities/groups/sample_activity_component.html.erb	100.0%
app/components/activities/groups/sample_activity_component.rb	100.0%
app/components/activities/list_item_component.html.erb	93.7%
app/components/activities/list_item_component.rb	100.0%
app/components/activities/projects/sample_activity_component.html.erb	100.0%
app/components/activities/projects/sample_activity_component.rb	100.0%
app/models/concerns/track_activity.rb	99.1%
app/services/samples/batch_file_import_service.rb	98.8%
app/services/samples/create_service.rb	100.0%
app/services/samples/metadata/update_service.rb	100.0%
app/services/workflow_executions/completion_service.rb	95.3%

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Reported by octocov

[deepsidhu85]

Looks good to me!