Data and code associated with species-specific indices accounting for variability in timing, location, and design of DFO High Seas/Basin Scale Coastal Interactions Surveys surveys. Manuscript (Model-based indices of juvenile Pacific salmon abundance highlight species-specific seasonal distributions and impacts of changes to survey design) in revision with Fisheries Research.
Scripts:
- clean_bcsi.R: data cleaning and figures related to raw data
- prep_prediction_grid.R: generate grid used for spatial predictions and index estimation
- all_species_fit_season_mvrw.R: fit species-specific models and generate ms figures
- par_recovery_sim.R: simulation exercise to evaluate recovery of fitted parameters