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1. NygenAnalytics/CyteType NygenAnalytics/CyteType Public

   Multi-agent driven cell type annotation for single-cell RNA-Seq data stored in Anndata format

   Python 35 8

2. cellradar cellradar Public

   cellradar

   JavaScript 1

3. scarf scarf Public

   Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.

   Python 101 14