Update gget_setup.py

pachterlab · Jan 10, 2024 · dfa42ca · dfa42ca
1 parent b095ed3
commit dfa42ca
Showing 1 changed file with 4 additions and 5 deletions.
diff --git a/gget/gget_setup.py b/gget/gget_setup.py
@@ -37,11 +37,6 @@
 PARAMS_DIR = os.path.join(PACKAGE_PATH, "bins/alphafold/")
 PARAMS_PATH = os.path.join(PARAMS_DIR, "params_temp.tar")
 
-## Variables for elm module
-ELM_INSTANCES_FASTA = f"{ELM_FILES}/elm_instances.fasta"
-ELM_CLASSES_TSV = f"{ELM_FILES}/elms_classes.tsv"
-ELM_INSTANCES_TSV = f"{ELM_FILES}/elm_instances.tsv"
-
 
 def setup(module, verbose=True, out=None):
     """
@@ -135,6 +130,10 @@ def setup(module, verbose=True, out=None):
         if not os.path.exists(ELM_FILES):
             os.makedirs(ELM_FILES)
 
+        ELM_INSTANCES_FASTA = f"{ELM_FILES}/elm_instances.fasta"
+        ELM_CLASSES_TSV = f"{ELM_FILES}/elms_classes.tsv"
+        ELM_INSTANCES_TSV = f"{ELM_FILES}/elm_instances.tsv"
+
         if platform.system() == "Windows":
             # The double-quotation marks allow white spaces in the path, but this does not work for Windows
             command = f"""