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deciphering microbial genomes
🦠
deciphering microbial genomes
163 followers · 77 following

Achievements

Achievement: YOLOAchievement: QuickdrawAchievement: Pair ExtraordinaireAchievement: Starstruckx2Achievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor

Achievements

Achievement: YOLOAchievement: QuickdrawAchievement: Pair ExtraordinaireAchievement: Starstruckx2Achievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor

Organizations

@ag-computational-bio

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oschwengers/README.md

Hi 👋

I'm a bioinformatician and PostDoc working in the field of microbial genomics. Besides hands-on analyses of WGS data, I'm especially interested in the development of bioinformatics methodologies & software tools for the analysis of bacterial WGS data with a special turn towards plasmids.

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  1. bakta Public

    Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

    Python 495 60

  2. platon Public

    Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

    Python 114 15

  3. referenceseeker Public

    Rapid determination of appropriate reference genomes.

    Python 93 6

  4. asap Public

    A scalable bacterial genome assembly, annotation and analysis pipeline

    Groovy 73 19

204 contributions in the last year

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Activity overview

Contributed to oschwengers/bakta, bioconda/bioconda-recipes, ag-computational-bio/bakrep-cli and 13 other repositories
Loading A graph representing oschwengers's contributions from April 07, 2024 to April 08, 2025. The contributions are 73% commits, 15% code review, 7% pull requests, 5% issues.

Contribution activity

April 2025

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