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    222 repositories

    • audit-service

      Public
      Python
      •
      Apache License 2.0
      •0•5•0•6•Updated Mar 22, 2025Mar 22, 2025

    • gen3-frontend-framework

      Public
      A Frontend Framework for Gen3 data portals
      TypeScript
      •
      Apache License 2.0
      •8•2•0•6•Updated Mar 22, 2025Mar 22, 2025

    • containers

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •7•1•0•81•Updated Mar 22, 2025Mar 22, 2025

    • sower

      Public
      Job dispatcher for Kubernetes
      gen3
      Go
      •
      Apache License 2.0
      •2•4•0•2•Updated Mar 21, 2025Mar 21, 2025

    • gitops-qa

      Public
      gen3-gitops
      HTML
      •
      Apache License 2.0
      •7•2•0•192•Updated Mar 21, 2025Mar 21, 2025

    • orthanc-builder

      Public
      Repo used to build osimis/orthanc docker images, windows installers and OSX packages
      Shell
      •
      GNU Affero General Public License v3.0
      •14•0•0•2•Updated Mar 21, 2025Mar 21, 2025

    • cloud-automation

      Public
      Automation for standing up Gen3 commons
      gen3
      Shell
      •
      Apache License 2.0
      •69•44•99•100•Updated Mar 21, 2025Mar 21, 2025

    • sheepdog

      Public
      API for herding data submissions
      gen3
      Python
      •
      Apache License 2.0
      •19•11•22•18•Updated Mar 21, 2025Mar 21, 2025

    • cdis-manifest

      Public
      Manifests tracking service versions to release to each environment
      HTML
      •
      Apache License 2.0
      •9•8•0•205•Updated Mar 21, 2025Mar 21, 2025

    • arborist

      Public
      Gen3 policy engine
      Go
      •
      Apache License 2.0
      •16•16•6•9•Updated Mar 21, 2025Mar 21, 2025

    • gen3-workflow

      Public
      Gen3 service for GA4GH TES integration
      Python
      •
      Apache License 2.0
      •0•1•0•5•Updated Mar 21, 2025Mar 21, 2025

    • dcf-dataservice

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•22•Updated Mar 21, 2025Mar 21, 2025

    • vpodc-data-commons

      Public template
      VPODC Data Commons using Gen3.2
      TypeScript
      •
      Apache License 2.0
      •21•0•0•0•Updated Mar 21, 2025Mar 21, 2025

    • gen3-terraform

      Public
      HCL
      •
      Apache License 2.0
      •0•1•0•8•Updated Mar 21, 2025Mar 21, 2025

    • metadata-service

      Public
      The Metadata Service provides API for retrieving JSON metadata of GUIDs.
      gen3
      Python
      •
      Apache License 2.0
      •10•16•2•5•Updated Mar 21, 2025Mar 21, 2025

    • prometheus-data-platform

      Public template
      Gen3 based UI for Prometheus Data Platform
      HTML
      •
      Apache License 2.0
      •21•0•0•1•Updated Mar 21, 2025Mar 21, 2025

    • pelican

      Public
      Sower jobs for PFB export & import
      gen3gen3-pfbgen3-sower-job
      Python
      •
      Apache License 2.0
      •4•3•0•9•Updated Mar 21, 2025Mar 21, 2025

    • cdis-python-utils

      Public
      utilities to ease python code development
      gen3-lib
      Python
      •
      Apache License 2.0
      •2•1•0•3•Updated Mar 21, 2025Mar 21, 2025

    • gen3-code-vigil

      Public
      Gen3 Testing
      Python
      •
      Apache License 2.0
      •2•2•0•9•Updated Mar 21, 2025Mar 21, 2025

    • cohort-middleware

      Public
      Middleware to work with Atlas cohorts in Gen3
      vadc
      Go
      •
      Apache License 2.0
      •1•1•0•3•Updated Mar 20, 2025Mar 20, 2025

    • vadc-gwas-tools

      Public archive
      Python CLI with various subcommands to support the argo GWAS workflows
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Mar 20, 2025Mar 20, 2025

    • base-images

      Public
      Dockerfile
      •
      Apache License 2.0
      •0•0•0•1•Updated Mar 20, 2025Mar 20, 2025

    • heal-platform-sdk

      Public
      Python
      •
      Apache License 2.0
      •0•1•0•2•Updated Mar 20, 2025Mar 20, 2025

    • gen3-helm

      Public
      Helm charts for Gen3 Deployments
      Smarty
      •
      Apache License 2.0
      •26•11•2•13•Updated Mar 20, 2025Mar 20, 2025

    • Viewers

      Public
      OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages
      TypeScript
      •
      MIT License
      •3.6k•1•0•42•Updated Mar 20, 2025Mar 20, 2025

    • fence

      Public
      AuthN/AuthZ OIDC Service
      gen3
      Python
      •
      Apache License 2.0
      •48•38•2•76•Updated Mar 20, 2025Mar 20, 2025

    • WebAPI

      Public
      OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications
      Java
      •
      Apache License 2.0
      •171•0•0•12•Updated Mar 19, 2025Mar 19, 2025

    • Atlas

      Public
      ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
      JavaScript
      •
      Apache License 2.0
      •141•0•0•2•Updated Mar 19, 2025Mar 19, 2025

    • commons-frontend-app

      Public template
      Gen3 Data Commons template repository for gen3 frontend framework
      TypeScript
      •
      Apache License 2.0
      •21•5•1•5•Updated Mar 19, 2025Mar 19, 2025

    • vadc-data-commons

      Public template
      VADC Gen3 Data Commons repository for gen3 frontend framework
      JavaScript
      •
      Apache License 2.0
      •21•0•0•1•Updated Mar 19, 2025Mar 19, 2025