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    • Pipeline to Extract Plant Phenotypes from Reference Data
      Python
      BSD 3-Clause "New" or "Revised" License
      13251002Updated Feb 24, 2025Feb 24, 2025
    • Python library for TERRA-REF specific modules and methods, e.g. those shared by multiple extractors.
      Python
      BSD 3-Clause "New" or "Revised" License
      4405Updated Oct 3, 2023Oct 3, 2023
    • the new science functions in Stereo-RGB extractor
      Python
      BSD 3-Clause "New" or "Revised" License
      0102Updated Jul 6, 2023Jul 6, 2023
    • laser3d

      Public
      ply file to plot level las file science function package
      Python
      BSD 3-Clause "New" or "Revised" License
      1112Updated Jul 6, 2023Jul 6, 2023
    • Scripts and code for generally applicable metadata extraction, e.g. extracting geospatial footprints from multiple sensors' metadata.
      Python
      BSD 3-Clause "New" or "Revised" License
      2101Updated Dec 26, 2022Dec 26, 2022
    • frontend for advanced search interface
      Vue
      01025Updated Dec 11, 2022Dec 11, 2022
    • A REST server that provide helps locate file products.
      Python
      1005Updated Dec 8, 2022Dec 8, 2022
    • Catalog of services available via TERRA-REF Analysis Workbench
      BSD 3-Clause "New" or "Revised" License
      1000Updated Nov 16, 2022Nov 16, 2022
    • Scripts and code relevant to the CO2 and environmental logger sensors, as well as Maricopa lightning/weather/irrigation data.
      Python
      BSD 3-Clause "New" or "Revised" License
      2001Updated Jun 21, 2022Jun 21, 2022
    • brapi

      Public
      Breeder's API implementation for TERRA-REF
      Python
      BSD 3-Clause "New" or "Revised" License
      2081Updated Jun 20, 2022Jun 20, 2022
    • icasa

      Public
      ICASA vocabulary
      Python
      BSD 3-Clause "New" or "Revised" License
      4200Updated Jun 7, 2022Jun 7, 2022
    • Scripts and code relevant to the 3D height scanner.
      Python
      BSD 3-Clause "New" or "Revised" License
      0010Updated Apr 13, 2022Apr 13, 2022
    • Shiny application for visualizing trait data
      R
      BSD 3-Clause "New" or "Revised" License
      42101Updated Apr 6, 2022Apr 6, 2022
    • Just the content going to Dryad; see also terraref/data-paper for data descriptor
      TeX
      0000Updated Mar 3, 2022Mar 3, 2022
    • tutorials

      Public
      Learn to use TERRA REF data and software
      Jupyter Notebook
      BSD 3-Clause "New" or "Revised" License
      118202Updated Sep 2, 2021Sep 2, 2021
    • Scripts and code relevant to the SWIR and VNIR cameras.
      Python
      BSD 3-Clause "New" or "Revised" License
      6500Updated Jun 2, 2021Jun 2, 2021
    • TERRAref documentation
      CSS
      76130Updated Feb 15, 2021Feb 15, 2021
    • Coordination of Data Products and Standards for TERRA reference data
      R
      BSD 3-Clause "New" or "Revised" License
      29640Updated Feb 1, 2021Feb 1, 2021
    • drone-pipeline

      Public archive
      Generalizing the TERRA REF pipelines for processing data from UAV's
      Python
      BSD 3-Clause "New" or "Revised" License
      2300Updated Nov 18, 2020Nov 18, 2020
    • Scripts and code relevant to the FLIR, PSII, NDVI, PRI and active reflectance (Crop Circle) sensors.
      MATLAB
      BSD 3-Clause "New" or "Revised" License
      6404Updated Oct 2, 2020Oct 2, 2020
    • Scripts and code relevant to the 8MP RGB stereo 3D cameras.
      Python
      BSD 3-Clause "New" or "Revised" License
      2201Updated Jul 7, 2020Jul 7, 2020
    • 2030Updated Jun 30, 2020Jun 30, 2020
    • Repo for general QA/QC tools and extractors.
      Python
      1000Updated May 17, 2020May 17, 2020
    • traits

      Public
      Species traits data
      R
      Other
      13201Updated Feb 10, 2020Feb 10, 2020
    • Device and sensor fixed metadata
      3101Updated Feb 4, 2020Feb 4, 2020
    • terraref.github.io

      Public archive
      [Deprecated] Original website content for the TERRA-REF reference phenotyping platform
      JavaScript
      Other
      0022Updated Dec 15, 2019Dec 15, 2019
    • flask api for advanced search interface
      Python
      0120Updated Sep 10, 2019Sep 10, 2019
    • TERRA-REF Dockerfiles for Clowder toolserver
      Dockerfile
      2001Updated Aug 9, 2019Aug 9, 2019
    • Terraform plan that uses data-8's kubeadm bootstrap for Kubernetes on Openstack
      HCL
      BSD 3-Clause "New" or "Revised" License
      6000Updated May 7, 2019May 7, 2019
    • Github repo for ECSS workflow pilot project
      Python
      1200Updated Feb 13, 2019Feb 13, 2019
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