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    76 repositories

    • ot-ui-apps

      Public
      Open Targets Platform web applications
      javascriptgraphqlreactjswebappembl-ebivitejsturborepoeuropean-bioinformatics-institute
      JavaScript
      •
      Apache License 2.0
      •11•5•0•7•Updated Feb 21, 2025Feb 21, 2025

    • gentropy

      Public
      Open Targets python framework for post-GWAS analysis
      pythonopen-sourcegwasgeneticspysparkdrug-discovery
      Jupyter Notebook
      •
      Apache License 2.0
      •9•35•0•8•Updated Feb 21, 2025Feb 21, 2025

    • platform-api

      Public
      GraphQL and Rest API rewrite of the current Open Targets platform API
      Scala
      •
      Apache License 2.0
      •5•10•1•0•Updated Feb 21, 2025Feb 21, 2025

    • platform-docs

      Public
      https://platform-docs.opentargets.org/
      1•0•0•2•Updated Feb 21, 2025Feb 21, 2025

    • pis

      Public
      Open Targets Pipeline Input Stage
      Python
      •
      Apache License 2.0
      •5•5•0•0•Updated Feb 20, 2025Feb 20, 2025

    • pts

      Public
      Open Targets Pipeline Transformation Stage
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Feb 20, 2025Feb 20, 2025

    • otter

      Public
      Open Targets' Task ExecutoR
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Feb 20, 2025Feb 20, 2025

    • evidence_datasource_parsers

      Public
      script to convert phewascatalog database to JSONs, with ENSGIDs and EFO ids.
      Python
      •
      Apache License 2.0
      •3•7•0•3•Updated Feb 20, 2025Feb 20, 2025

    • orchestration

      Public
      Open Targets pipeline orchestration layer
      Python
      •
      Apache License 2.0
      •0•1•1•2•Updated Feb 19, 2025Feb 19, 2025

    • ot_croissant

      Public
      Exploratory version for OT croissant
      Python
      •0•0•0•0•Updated Feb 19, 2025Feb 19, 2025

    • platform-etl-backend

      Public
      Scala
      •
      Apache License 2.0
      •8•8•0•3•Updated Feb 19, 2025Feb 19, 2025

    • json_schema

      Public
      Open Targets target-disease association schema
      Python
      •
      Apache License 2.0
      •10•9•0•2•Updated Feb 18, 2025Feb 18, 2025

    • terraform-google-opentargets-platform

      Public
      Terraform module for Open Targets Platform infrastructure definition
      HCL
      •
      Apache License 2.0
      •2•1•0•0•Updated Feb 17, 2025Feb 17, 2025

    • platform-output-support

      Public
      POS is an automatic and unified place to perform a release of OT Platform to the public
      Shell
      •
      Apache License 2.0
      •3•0•0•0•Updated Feb 17, 2025Feb 17, 2025

    • gentroutils

      Public
      Utility CLI tools for gentropy orchestration
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Feb 12, 2025Feb 12, 2025

    • curation

      Public
      mappings used by the open targets platform to integrate data sources
      Python
      •
      Apache License 2.0
      •1•4•0•0•Updated Feb 5, 2025Feb 5, 2025

    • opentargets.github.io

      Public
      Open Targets corporate website code using Jekyll
      jekyll
      HTML
      •
      Apache License 2.0
      •3•8•0•2•Updated Feb 4, 2025Feb 4, 2025

    • ontoform

      Public
      Transforms ontologies and other input data into the format used by the Open Targets pipeline
      Python
      •
      Apache License 2.0
      •0•0•0•1•Updated Jan 15, 2025Jan 15, 2025

    • ot-release-metrics

      Public
      Collection and visualisation of Open Targets Platform release metrics.
      Python
      •
      Apache License 2.0
      •0•1•0•1•Updated Dec 23, 2024Dec 23, 2024

    • timeseries

      Public
      Assess the evolution over time of evidence supporting disease-target associations in the Open Targets Platform.
      timeseriespysparkopentargets
      Jupyter Notebook
      •0•2•0•0•Updated Dec 12, 2024Dec 12, 2024

    • ot-snapshot

      Public
      Snapshots for all the components used to generate a release of the Open Targets Platform
      0•0•0•0•Updated Dec 11, 2024Dec 11, 2024

    • standalone-deployment-platform

      Public
      Standalone local deployment for Open Targets Platform
      Shell
      •
      Apache License 2.0
      •1•4•1•0•Updated Dec 3, 2024Dec 3, 2024

    • OnToma

      Public
      Map your disease and phenotype terms to the Open Targets platform ontology
      Python
      •
      Apache License 2.0
      •6•21•0•1•Updated Nov 21, 2024Nov 21, 2024

    • ot-ai-api

      Public
      Specialised API service that provides AI-driven endpoints to support the Open Targets web application, integrating natural language processing (NLP) and data extraction features
      JavaScript
      •
      Apache License 2.0
      •1•0•0•1•Updated Oct 29, 2024Oct 29, 2024

    • k8s-gcp-platform

      Public
      This repository defines an Open Targets Platform deployment on top of a Kubernetes cluster
      Shell
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 23, 2024Oct 23, 2024

    • parquet2json

      Public
      Parquet to JSON lines converter
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 18, 2024Oct 18, 2024

    • station-pos

      Public
      This is a channel for POS to announce events
      Apache License 2.0
      •0•0•0•0•Updated Oct 17, 2024Oct 17, 2024

    • gentropy-input-support

      Public
      Non-Spark preprocessing for datasource ingestion
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 1, 2024Oct 1, 2024

    • baseline-expression

      Public
      Code and documentation for baseline expression and specificity data.
      Jupyter Notebook
      •
      Apache License 2.0
      •0•1•0•0•Updated Sep 20, 2024Sep 20, 2024

    • google-batch-monitor

      Public
      Shell
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 20, 2024Sep 20, 2024