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    47 repositories

    • forest

      Public
      Forest is a library for analyzing smartphone-based high-throughput digital phenotyping data
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •21•37•20•5•Updated Sep 11, 2026Sep 11, 2026

    • mano

      Public
      Mano - Beiwe research platform API
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•4•2•2•Updated Sep 8, 2026Sep 8, 2026

    • beiwe-ios

      Public
      Beiwe is a smartphone-based digital phenotyping research platform. This is the Beiwe iOS app code. The Beiwe2 app is also available on the Apple app store to us…
      ios-appbeiwe
      ios-appbeiwe
      Swift
      •
      BSD 3-Clause "New" or "Revised" License
      •15•24•32•4•Updated Sep 8, 2026Sep 8, 2026

    • beiwe-android

      Public
      Beiwe is a smartphone-based digital phenotyping research platform. This is the Beiwe Android app code. The Beiwe2 app is also available on the Google Play store…
      Kotlin
      •
      BSD 3-Clause "New" or "Revised" License
      •18•28•13•4•Updated Sep 8, 2026Sep 8, 2026

    • beiwe-backend

      Public
      Beiwe is a smartphone-based digital phenotyping research platform. This is the Beiwe backend code
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •52•76•86•4•Updated Sep 8, 2026Sep 8, 2026

    • beiwe

      Public
      Beiwe is a smartphone-based digital phenotyping research platform.
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •8•13•1•1•Updated Sep 7, 2026Sep 7, 2026

    • simulation-based-graph-inference

      Public
      Python
      •0•0•0•0•Updated Mar 10, 2026Mar 10, 2026

    • sentinel

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Feb 5, 2026Feb 5, 2026

    • lsm-lasso

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jan 12, 2026Jan 12, 2026

    • summaries

      Public
      Unifying Summary Statistic Selection for Approximate Bayesian Computation
      deep-learninginformation-theoryapproximate-bayesian-computation
      deep-learninginformation-theoryapproximate-bayesian-computation
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Oct 20, 2025Oct 20, 2025

    • coaloracle

      Public
      Repository for simulated genetic data presented by Nunes and Balding (2010).
      Makefile
      •
      MIT License
      •1•0•0•0•Updated Oct 15, 2025Oct 15, 2025

    • hiv

      Public
      Bayesian Inference for Sexual Contact Networks Using Longitudinal Survey Data
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Sep 29, 2025Sep 29, 2025

    • mpox-model

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•1•0•Updated Sep 3, 2025Sep 3, 2025

    • net-summary-selection

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Aug 20, 2025Aug 20, 2025

    • mdn-abc-epidemic

      Public
      Inference on parameters of a network contagion, using MDN-ABC.
      Python
      •0•0•0•0•Updated Apr 26, 2025Apr 26, 2025

    • gptools

      Public
      Gaussian processes on graphs and lattices in Stan.
      graphfftstan
      graphfftstangaussian-processes
      Python
      •
      MIT License
      •0•19•2•0•Updated Mar 17, 2025Mar 17, 2025

    • gptoolsStan

      Public archive
      This repository has been merged into https://github.com/onnela-lab/gptools/.
      bayesian-inferencegaussian-processescmdstan
      bayesian-inferencegaussian-processescmdstancmdstanr
      0•1•0•0•Updated Feb 25, 2025Feb 25, 2025

    • gptools-reproduction-material

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jan 3, 2025Jan 3, 2025

    • abc-uncertain-networks

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Nov 22, 2024Nov 22, 2024

    • covariate-smoothed-layout

      Public
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Sep 20, 2024Sep 20, 2024

    • connecting-ma-network

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Aug 20, 2024Aug 20, 2024

    • temporal-configuration-model

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jul 16, 2024Jul 16, 2024

    • longitudinal-inference

      Public
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Feb 9, 2024Feb 9, 2024

    • covariate-net-vis

      Public
      Visualizing networks with nominal nodal covariates
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jan 9, 2024Jan 9, 2024

    • beiwe-manuals

      Public
      0•0•0•0•Updated Oct 12, 2023Oct 12, 2023

    • summaries-archive

      Public archive
      Please see https://github.com/onnela-lab/summaries for up to date code.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Oct 4, 2023Oct 4, 2023

    • als-beiwe-passive-data

      Public
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Aug 1, 2023Aug 1, 2023

    • als-forearm-movements

      Public
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •3•0•1•0•Updated May 15, 2023May 15, 2023

    • als-wearables

      Public
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jan 16, 2023Jan 16, 2023

    • stb-beiwe-screen-time

      Public
      R
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jan 13, 2023Jan 13, 2023
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