Repositories list

• moiexpositoalonsolab.github.io

  Public
  Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

  HTML

  •

  MIT License

  •0•0•0•0•Updated Aug 7, 2025Aug 7, 2025

• gendivmeta

  Public
  R

  •0•0•0•0•Updated Aug 5, 2025Aug 5, 2025

• Deepbiosphere

  Public
  deep-learningremote-sensingconvolutional-neural-networks+ 2citizen-sciencespecies-distribution-modeling

  Python

  •

  MIT License

  •4•23•6•1•Updated Aug 1, 2025Aug 1, 2025

• grenepipe

  Public
  A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - for sampled individuals, and for pool sequencing.

  snakemakevariant-callingpopulation-genetics+ 6variant-callssnakemake-workflowpool-sequencingancient-dnaevolve-and-resequencegenomic-variant-calling

  Python

  •

  GNU General Public License v3.0

  •24•103•2•0•Updated Jun 24, 2025Jun 24, 2025

• grenephase1-paper

  Public
  Jupyter Notebook

  •0•0•0•0•Updated May 31, 2025May 31, 2025

• grene

  Public
  the R package of the GrENE-net evolution experiment (grene-net.org)

  Jupyter Notebook

  •

  Other

  •2•2•0•0•Updated Apr 24, 2025Apr 24, 2025

• DivShift

  Public
  Code for DivShift: Exploring Domain-Specific Distribution Shift in Large-Scale, Volunteer-Collected Biodiversity Datasets

  deep-learningconvolutional-neural-networkscitizen-science+ 2biasfine-grained-classification

  Python

  •

  MIT License

  •0•1•0•0•Updated Apr 16, 2025Apr 16, 2025

• grenedalf

  Public
  Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments

  C++

  •

  GNU General Public License v3.0

  •4•0•0•0•Updated Oct 23, 2024Oct 23, 2024

• HapFIRE

  Public
  Python

  •

  Apache License 2.0

  •1•0•0•0•Updated Aug 21, 2024Aug 21, 2024

• Athaliana_Natural_Selection_Conflict

  Public
  Analyses of Arabidopsis thaliana phenotype, climate, and genotype data associated with Ruffley et. al 2023

  1•0•0•0•Updated Jun 11, 2024Jun 11, 2024

• mar2

  Public
  Repository of MAR2.0 paper

  0•0•0•0•Updated Feb 16, 2023Feb 16, 2023

• grene-net.org

  Public
  0•0•0•0•Updated Aug 29, 2022Aug 29, 2022

• mar

  Public
  Scripts to build the Mutations Area Relationship

  MIT License

  •6•0•0•0•Updated Apr 2, 2022Apr 2, 2022

• phenoselection

  Public
  R

  •0•0•0•0•Updated May 15, 2021May 15, 2021

• napspg

  Public
  C++

  •0•0•0•0•Updated Apr 26, 2020Apr 26, 2020

• genemaps

  Public
  R

  •

  MIT License

  •1•0•0•0•Updated Dec 2, 2019Dec 2, 2019

• grenepool

  Public
  Code for pool seq analyses of the GrENE-net project (grene-net.org)

  Python

  •1•0•0•0•Updated Apr 12, 2019Apr 12, 2019

• rbioclim

  Public
  Simple R package to download past present and future climate maps of the world

  R

  •8•0•0•0•Updated Dec 19, 2018Dec 19, 2018

• popgensim

  Public
  Interactive Shiny app plotting simulations under 1-loci Wright Fisher populations

  HTML

  •

  MIT License

  •1•0•0•0•Updated Sep 10, 2018Sep 10, 2018