Repositories list

• graphql-server

  Public
  A GraphQL server that supports the Legume Information System and related biodata websites

  graphqlmicroservicestypescript+ 3biologyinterminelegumes

  TypeScript

  •

  Apache License 2.0

  •3•2•10•1•Updated Apr 2, 2025Apr 2, 2025

• website-ui-specs

  Public
  User interface specification of components built for the Jekyll sites.

  Apache License 2.0

  •0•0•4•0•Updated Apr 2, 2025Apr 2, 2025

• minimine

  Public
  A small mine for testing GraphQL queries and such.

  Java

  •

  GNU Lesser General Public License v3.0

  •0•0•0•0•Updated Apr 2, 2025Apr 2, 2025

• Optimized_AHRD

  Public
  An optimized Nextflow pipeline to run AHRD

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Apr 2, 2025Apr 2, 2025

• gene-function-registry

  Public
  A set of records (pages) for collecting information about gene function in a human- and machine-readable format.

  Perl

  •2•0•0•2•Updated Apr 1, 2025Apr 1, 2025

• jekyll-legumeinfo

  Public
  legumeinfo.org built with Jekyll and served on GitHub Pages

  HTML

  •

  Apache License 2.0

  •1•4•6•0•Updated Apr 1, 2025Apr 1, 2025

• microservices

  Public
  A collection of microservices developed and maintained by the Legume Information System

  pythonredisbioinformatics+ 4asynciodockermicroservicesgrpc

  Python

  •

  Apache License 2.0

  •1•3•19•67•Updated Mar 31, 2025Mar 31, 2025

• DSCensor

  Public
  Process LIS Datastore and Provide Web Facing RESTFUL API

  Python

  •

  Apache License 2.0

  •0•0•1•1•Updated Mar 31, 2025Mar 31, 2025

• datastore-metadata

  Public
  All the LIS Datastore YAML files under one roof.

  0•0•0•0•Updated Mar 28, 2025Mar 28, 2025

• web-components

  Public
  A collection of Web Components for interacting with and visualizing biological data.

  typescriptbiologyweb-components+ 2litlegumes

  TypeScript

  •

  Apache License 2.0

  •3•5•10•14•Updated Mar 27, 2025Mar 27, 2025

• mine-dbmodel-resources

  Public
  dbmodel/resources files common to all mines

  0•0•0•0•Updated Mar 25, 2025Mar 25, 2025

• sequenceserver

  Public
  Intuitive local web frontend for the BLAST bioinformatics tool

  JavaScript

  •

  GNU Affero General Public License v3.0

  •114•0•2•0•Updated Mar 14, 2025Mar 14, 2025

• docker-intermine-gradle

  Public
  Docker for InterMine

  Shell

  •

  GNU Lesser General Public License v2.1

  •19•1•0•0•Updated Mar 7, 2025Mar 7, 2025

• datastore-registry

  Public
  Registry of unique KEY4 keys and their associated Genus-species-collection information

  Perl

  •0•1•0•0•Updated Mar 6, 2025Mar 6, 2025

• lis_gis

  Public
  Geographic map browser for LIS germplasm accession and trait evaluation data

  JavaScript

  •

  GNU General Public License v3.0

  •1•0•5•0•Updated Feb 28, 2025Feb 28, 2025

• gcvit

  Public
  CViT based tool for visualising VCF files.

  JavaScript

  •

  MIT License

  •8•0•0•0•Updated Feb 28, 2025Feb 28, 2025

• h5ai

  Public archive
  HTTP web server index for Apache httpd, lighttpd and nginx.

  JavaScript

  •609•0•0•0•Updated Feb 26, 2025Feb 26, 2025

• gcv-docker-compose

  Public
  Resources for running the Genome Context Viewer with Docker Compose

  Shell

  •

  Apache License 2.0

  •1•2•5•0•Updated Feb 25, 2025Feb 25, 2025

• pandagma

  Public
  Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.

  Shell

  •

  BSD 3-Clause "New" or "Revised" License

  •1•17•2•0•Updated Feb 25, 2025Feb 25, 2025

• lis-bio-sources

  Public
  The InterMine loaders for importing data from the LIS datastore.

  Java

  •

  GNU Lesser General Public License v3.0

  •0•0•0•0•Updated Feb 21, 2025Feb 21, 2025

• intermine

  Public
  A powerful open source data warehouse system

  Java

  •

  Other

  •349•0•0•0•Updated Feb 20, 2025Feb 20, 2025

• legumeinfo.org

  Public
  general site issues (or a place to log issues if you just want to put them somewhere and triage which repository they properly belong to later)

  HTML

  •0•0•14•0•Updated Feb 12, 2025Feb 12, 2025

• datastore-specifications

  Public
  Specifications for directory naming, file naming, file contents in the LIS datastore

  Perl

  •0•2•14•0•Updated Feb 11, 2025Feb 11, 2025

• jbrowse-plugin-gwas

  Public
  TypeScript

  •1•0•0•0•Updated Feb 5, 2025Feb 5, 2025

• jbrowse-components

  Public
  Source code for JBrowse 2, a modern React-based genome browser

  TypeScript

  •

  Apache License 2.0

  •65•0•0•0•Updated Jan 6, 2025Jan 6, 2025

• web-components-graphql

  Public
  A TypeScript library that provides code for usng LIS Web Components with the LIS GraphQL Server

  JavaScript

  •

  Apache License 2.0

  •0•0•0•12•Updated Dec 30, 2024Dec 30, 2024

• glycinemine

  Public
  An InterMine for Glycine species

  Java

  •

  GNU Lesser General Public License v3.0

  •1•0•0•0•Updated Dec 23, 2024Dec 23, 2024

• LIS-autocontent

  Public
  Scrapes the LIS datastore and populates various configs and databases for deployment

  Python

  •

  Apache License 2.0

  •1•0•15•1•Updated Dec 4, 2024Dec 4, 2024

• cmap

  Public
  A browser-based tool for the visual comparison of various maps (sequence, genetic, etc.) from any number of species.

  Perl

  •

  Other

  •2•0•0•0•Updated Nov 23, 2024Nov 23, 2024

• vignamine

  Public
  A mine with Vigna data from the LIS Datastore

  Java

  •

  GNU Lesser General Public License v3.0

  •0•0•0•0•Updated Oct 28, 2024Oct 28, 2024