Repositories list

• gwaspipe

  Public
  GWASPipe: Automated Genetic Data Management and Workflow Standardization

  computational-data-hub

  Python

  •3•0•0•0•Updated Feb 6, 2026Feb 6, 2026

• pqtl_meta_paper

  Public
  Scripts for pQTLs meta-analysis paper

  R

  •0•0•0•0•Updated Feb 3, 2026Feb 3, 2026

• Drug-adherence-trajectories

  Public
  Drug adherence trajectories scripts for analysis in Regione Lombardia Data

  R

  •0•0•0•0•Updated Feb 2, 2026Feb 2, 2026

• UndervaccinationRL

  Public
  Code used to produce the analysis of the covid-19 undervaccination manuscript in Lomabardy

  R

  •0•0•0•0•Updated Feb 2, 2026Feb 2, 2026

• pqtl_liftover

  Public
  A Repository to Perform Genomic Liftover

  R

  •0•0•0•0•Updated Jan 30, 2026Jan 30, 2026

• pqtl_conditional

  Public
  Fine mapping analysis within the pQTL pipeline project

  snakemakeintervalqtl+ 6gctacolocalizationgwas-summary-statisticssnakemake-pipelinecojocoloc

  R

  •

  MIT License

  •0•2•4•2•Updated Jan 28, 2026Jan 28, 2026

• pqtl_locuszoom

  Public
  Regional association plot of the signals in the pQTL project

  qtlpqtlgwas-summary-statistics

  Python

  •0•1•4•0•Updated Jan 22, 2026Jan 22, 2026

• pqtl_susie

  Public
  A snakemake pipeline for fine-mapping protein QTLs using SuSiE

  R

  •0•0•6•0•Updated Jan 19, 2026Jan 19, 2026

• gwasstudio

  Public
  Powerful CLI tool designed for efficient storage, retrieval, and querying of genomic summary statistics

  computational-data-hub

  Python

  •0•2•13•0•Updated Jan 16, 2026Jan 16, 2026

• genomics_QC_pipeline

  Public
  snakemakeintervalgenetic-data+ 2snakemake-pipelineimputed

  Python

  •0•0•0•1•Updated Jan 13, 2026Jan 13, 2026

• pqtl-believe-interval

  Public
  Working space for Believe Interval projects analysis

  intervalpqtlbelieve

  R

  •5•2•0•0•Updated Jan 9, 2026Jan 9, 2026

• pqtl_coloc

  Public
  Perform Colocalization analysis for pQTLs using tileDB

  Shell

  •0•0•1•0•Updated Dec 30, 2025Dec 30, 2025

• pqtl_believe_paper

  Public
  Repository to gather your any kind of scripts analyzing pQTL data belonged to the Believe study.

  0•0•0•0•Updated Dec 12, 2025Dec 12, 2025

• pqtl_ldscore

  Public
  Python

  •0•0•0•0•Updated Dec 3, 2025Dec 3, 2025

• harmonization_pipeline

  Public
  snakemakeintervalharmonization+ 4chrisgwas-summary-statisticssnakemake-pipelinebelieve

  Python

  •0•0•1•0•Updated Nov 25, 2025Nov 25, 2025

• cdh_in_a_box

  Public
  computational-data-hub

  Makefile

  •0•2•0•0•Updated Nov 18, 2025Nov 18, 2025

• containers

  Public
  dockerdocker-containerbioinformatics-tool

  R

  •0•0•0•0•Updated Nov 7, 2025Nov 7, 2025

• Extraction-pipelines-RL

  Public
  Pipelines for extracting information/exposure from RL data

  R

  •0•0•0•0•Updated Oct 28, 2025Oct 28, 2025

• pqtl_annotation

  Public
  Annotating variants or loci within the pQTL pipeline project

  R

  •0•0•4•0•Updated Oct 6, 2025Oct 6, 2025

• ld_pipe

  Public
  Compute LD from list of variants in different hotspots

  Python

  •0•0•0•0•Updated Sep 24, 2025Sep 24, 2025

• pqtl_mif

  Public
  Downstream analyses for the signals located in MIF region

  R

  •0•0•3•0•Updated Sep 16, 2025Sep 16, 2025

• gwasstudio_example_data

  Public
  0•0•0•0•Updated Jul 20, 2025Jul 20, 2025

• ds4hb_workshop_t1_1

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jul 10, 2025Jul 10, 2025

• ukb_pgs

  Public
  A help to construct genetic score in UKB for Andrea Lampis

  R

  •0•0•3•0•Updated May 19, 2025May 19, 2025

• sumstats_load_pipeline_in_tiledb

  Public
  computational-data-hub

  Python

  •0•0•1•0•Updated Apr 5, 2025Apr 5, 2025

• pqtl_downstream

  Public
  snakemakemappinginterval+ 5hotspotliterature-reviewmendelian-randomizationpqtlsnakemake-pipeline

  R

  •0•0•1•0•Updated Apr 1, 2025Apr 1, 2025

• MR_instruments_selection

  Public
  snakemakeintervalqtl+ 3mendelian-randomizationpqtlsnakemake-pipeline

  R

  •0•0•2•0•Updated Mar 4, 2025Mar 4, 2025

• Literature_Review_for_Believe

  Public
  0•0•0•0•Updated Feb 26, 2025Feb 26, 2025

• meta_pipeline

  Public
  snakemakemetalinterval+ 4meta-analysischrisgwas-summary-statisticssnakemake-pipeline

  Python

  •0•1•0•0•Updated Jan 23, 2025Jan 23, 2025

• gwaslab

  Public
  A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/

  Python

  •

  GNU General Public License v3.0

  •40•0•0•0•Updated Jan 9, 2025Jan 9, 2025